Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17665 295 / 9e-99 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003829 [exp] 304 / 1e-101 AT1G17665 280 / 2e-92 unknown protein Lus10006153 [exp] 142 / 6e-39 AT1G17665 125 / 7e-33 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G038600.1 pacid=42786962 polypeptide=Potri.003G038600.1.p locus=Potri.003G038600 ID=Potri.003G038600.1.v4.1 annot-version=v4.1 ATGGCGGCGGCGTCTCTTCTTACTTTTCCTGTAACTAACAGTAGCATCTTATCGAATCTAATCTCCGAATTCCTAATTTTATCGAACCATAATCAACTCT TCTTCTTCTTCTTCTTTATCTTTGCTTTCTTTCTTTCTTTCTCTCTCTCTGTCTTTCTTCTCTGCAGAAGACTTCGTCGACGGCCCAAAACCCATAACGA CCCCTTACTTATTGACCCTTCTTTAACGAAATTGATTAATGGAGCTCGAAAAACGGGTGAAAATGGCAAGACCCGTTTGCCCCATTCGCTTCTTCTTGAT ATCTTGCCAGGTGCACTGACAAGTGGTGACGTGGATAAGACCGGGTCGGGTCATGAGGAGGAGAGAGACGGGTCGGTTGAGGATCTGCAGAGGGTTAAGA AGAAGAAGAAGAGGAAGGCGAAGAAGAAAAGATTGTTAGATTTGAAAAGTGAAGAAAATGGTTTTGGCGGTGATTCAGAGAAAGAAAGGCAAAAGCCAGA ATTGGTATGTCTGTATCCTTTTACTTCTACGAGCAGTGCTACCCAGAGAAAGATCAAGCAGCAGTATGATCAGCTTGTCAAGTGCAATGAAAGCAATGCA CTGACATTAGCTCAGGTTGGAGAATTTGCAAATTGCTTGATTGAGGCTAGAACTGAGTTGCAACACAAGTCGGAGGTCATCAAGCGTAAGTTCACGATAA CGAAGGCTCTGCTGTTCAAGGCAGACAGGTCTTCAATTGATCGCCTTCGTCAGCAGATTTACAAGCTAGAGCTAGAACAAAAAAGATTAGAGGAGGATAC TTTTGTTTATAATTGGCTTCAGCAGCAGCTTAAACTCTCACCAGCATACAAGAAGATGCTTGAAATCAGTGCCTGTGTGGAGTTGAAGGCCAAGTCCGAA GAGGTGATCGAGACAAATGATCATGAATTTGGTGATATTTCCTTTGAAGAGCTGTTAGCACAAGAAAAGAAGGATGCATTTTGGCAGAAAAATGGGAAAT TGCGAACATACTCAAGCTGA
AA sequence Show only first row Show all	>Potri.003G038600.1 pacid=42786962 polypeptide=Potri.003G038600.1.p locus=Potri.003G038600 ID=Potri.003G038600.1.v4.1 annot-version=v4.1 MAAASLLTFPVTNSSILSNLISEFLILSNHNQLFFFFFFIFAFFLSFSLSVFLLCRRLRRRPKTHNDPLLIDPSLTKLINGARKTGENGKTRLPHSLLLD ILPGALTSGDVDKTGSGHEEERDGSVEDLQRVKKKKKRKAKKKRLLDLKSEENGFGGDSEKERQKPELVCLYPFTSTSSATQRKIKQQYDQLVKCNESNA LTLAQVGEFANCLIEARTELQHKSEVIKRKFTITKALLFKADRSSIDRLRQQIYKLELEQKRLEEDTFVYNWLQQQLKLSPAYKKMLEISACVELKAKSE EVIETNDHEFGDISFEELLAQEKKDAFWQKNGKLRTYSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17665			unknown protein		Potri.003G038600 [exp]	0	1
AT2G18700		ATTPSB, ATTPS11	TREHALOSE-6-PHOSPHATE SYNTHASE...		Potri.018G097700 [exp]	1.41	0.8189
AT5G52230		MBD13	methyl-CPG-binding domain prot...		Potri.015G140100 [exp]	1.41	0.8116
AT1G52290		AtPERK15	proline-rich extensin-like rec...		Potri.003G053301 [exp]	5.09	0.7671
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Potri.006G264000 [exp]	8.94	0.7578
AT1G44130			Eukaryotic aspartyl protease f...		Potri.005G179900 [exp]	9.48	0.7431
AT4G17900			PLATZ transcription factor fam...		Potri.001G141500 [exp]	9.59	0.7952
AT1G69550			disease resistance protein (TI...		Potri.005G030318 [exp]	9.79	0.8086
AT5G41840			F-box/RNI-like superfamily pro...		Potri.006G244700 [exp]	12.84	0.7490
AT1G69550			disease resistance protein (TI...		Potri.005G031899 [exp]	13.22	0.7930
AT5G24890			unknown protein		Potri.006G273100 [exp]	14.96	0.7515

Compare expression of checked genes

Potri.003G038600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.