Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATMSI4.2,NFC907
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19520 720 / 0 ATMSI4, ACG1, NFC4, NFC04, FVE MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) AT4G29730 638 / 0 MSI5, NFC5 nucleosome/chromatin assembly factor group C5 (.1) AT2G16780 207 / 4e-62 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT4G35050 194 / 8e-57 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT5G58230 193 / 1e-56 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT2G19540 113 / 4e-27 Transducin family protein / WD-40 repeat family protein (.1) AT5G23430 65 / 5e-11 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G29260 60 / 1e-09 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT4G02730 59 / 2e-09 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT2G32950 59 / 4e-09 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G068200 [exp] 745 / 0 AT2G19520 812 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.006G151800 [exp] 743 / 0 AT2G19520 814 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.009G135100 [exp] 201 / 8e-60 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.004G175300 [exp] 196 / 8e-58 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.002G216200 [exp] 192 / 3e-56 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G179700 [exp] 191 / 8e-56 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G094000 [exp] 105 / 3e-24 AT2G19540 623 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.005G074400 [exp] 105 / 4e-24 AT2G19540 631 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.010G255400 [exp] 66 / 2e-11 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027632 [exp] 702 / 0 AT2G19520 815 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Lus10011936 [exp] 510 / 2e-179 AT2G19520 577 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Lus10027848 [exp] 196 / 6e-58 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10005074 [exp] 196 / 8e-58 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10033460 [exp] 190 / 3e-55 AT5G58230 781 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020916 [exp] 187 / 2e-54 AT5G58230 782 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033459 [exp] 174 / 2e-49 AT5G58230 723 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020917 [exp] 151 / 5e-41 AT5G58230 696 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10025341 [exp] 114 / 5e-27 AT2G19540 668 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Lus10024403 [exp] 112 / 1e-26 AT2G19540 659 / 0.0 Transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] PF12265 [poplar] [flax] CAF1C_H4-bd Histone-binding protein RBBP4 or subunit C of CAF1 complex
Representative CDS sequence Show only first row Show all	>Potri.003G038800.1 pacid=42786847 polypeptide=Potri.003G038800.1.p locus=Potri.003G038800 ID=Potri.003G038800.1.v4.1 annot-version=v4.1 ATGGGGGTGAACGAGAGATACACACAATGGAAGACTCTGGTCCCTGTCCTCTACGATTGGCTCGCTAATCACAACCTCGTCTGGCCCTCTCTTTCTTGCC GATGGGGTCCACAGCTTGAGCAAGCTACTTACAAGAATCGTCAGCGCTTGTACCTCTCTGAACAGACAGATGGCAGTGTTCCAAATACTCTGGTCATTGC TAACTGTGAAGTTGTTAAACCAAGGGTTGCAGCTGCAGAACACATATCACAGTTCAATGAGGAAGCGCGCTCTCCCTTTGTAAAGAAGTATAAAACTATT ATACACCCTGGCGAGGTGAACAGAATCAGGGAACTCCCACAGAACACCAACATTGTGGCTACACACACCGATAGTCCTGATGTTCTCATTTGGGATGTTG ATTCTCAACCTAATCGTCATGCTGTCCTGGGAGCTACAGAGTCTTGTCCAGATCTGATATTGACTGGCCATAAAGACGATGCTGAATTCGCTCTTGCTAT GTGTCCAACTGAGCCCTTTGTGCTCTCTGGAGGTAAGGACAAGTTGGTGGTTTTGTGGAGTATTCAGGACCATATTTCAACTTTGGCAGCAGAGCCAGGG TTGTCAAAGTCTCCTGGATCTGGTGGCTTCCCTAATAAATCTGCCTCTAAGGCAGGTGGAGGTAATGACAAACGTACCAAGAGTCCTTCCATTGGACCAC GGGATGTCTACCAAGGGCATACAGATACTGTTGAAGATGTTCAATTCTGCCCATCAAGTGCACAGGAGTTCTGCAGTGTGGGTGATGATTCTTGCCTTGT ATTATGGGATGCAAGAGCTGGCTGTACTCCAGTTGTCAAGGTTGAGAAAGCTCACAATGCTGATCTTCATTGTGTTGATTGGAATCCTCATGATGTGAAT CTCATTCTGACAGGGTCTGCTGATAATTCTGTTCACATGTTTGATCGTCGGAACCTCAATCTTGGAGGGGTAGGAGCACCTGTTCATAAGTTTGAGGGTC ATAATGCTGCAGTCCTCTGTGTACAGTGGTCTCCAGATAAATCGTCTGTCTTCGGCACTTCTGCAGAGGATGGCATTCTAAATATATGGGATTACGAAAA GATTGGTAAAAAACAAGATTCTACTGGACTGAAAGTGCCAACTGCTCCTCCCGGATTATTTTTCCGGCATGCGGGCCATCGGGATAAGGTTGTTGACTTC CACTGGAATGCATCTGATCCATGGACAATTGTCAGTGTGTCTGACGATGGTGAAAGTACAGGAGGAGGCGGCACTCTACAGATATGGCGAATGATTGATT TGATTCACAGGGCCGAGGAGGATGTCTTGGTTGAGCTTGAGAATTTCAAATCTCACATTCTCGCATGTGAAAGAAGTTAG
AA sequence Show only first row Show all	>Potri.003G038800.1 pacid=42786847 polypeptide=Potri.003G038800.1.p locus=Potri.003G038800 ID=Potri.003G038800.1.v4.1 annot-version=v4.1 MGVNERYTQWKTLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTI IHPGEVNRIRELPQNTNIVATHTDSPDVLIWDVDSQPNRHAVLGATESCPDLILTGHKDDAEFALAMCPTEPFVLSGGKDKLVVLWSIQDHISTLAAEPG LSKSPGSGGFPNKSASKAGGGNDKRTKSPSIGPRDVYQGHTDTVEDVQFCPSSAQEFCSVGDDSCLVLWDARAGCTPVVKVEKAHNADLHCVDWNPHDVN LILTGSADNSVHMFDRRNLNLGGVGAPVHKFEGHNAAVLCVQWSPDKSSVFGTSAEDGILNIWDYEKIGKKQDSTGLKVPTAPPGLFFRHAGHRDKVVDF HWNASDPWTIVSVSDDGESTGGGGTLQIWRMIDLIHRAEEDVLVELENFKSHILACERS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Potri.003G038800 [exp]	0	1	Pt-ATMSI4.2,NFC907
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Potri.006G156314 [exp]	2.82	0.9083
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Potri.006G159200 [exp]	3.16	0.9000
AT1G68000		ATPIS1	phosphatidylinositol synthase ...		Potri.004G175600 [exp]	6.63	0.8337
AT4G22600			unknown protein		Potri.001G120700 [exp]	9.79	0.8155
AT5G11800		ATKEA6, KEA6	K+ efflux antiporter 6, ARABID...		Potri.018G054100 [exp]	10.09	0.8605	ATKEA4.2
AT1G10180			unknown protein		Potri.015G119300 [exp]	12.04	0.8621
AT3G19340			Protein of unknown function (D...		Potri.002G237700 [exp]	13.49	0.8266
AT4G10890			unknown protein		Potri.007G058050 [exp]	14.14	0.7950
AT4G30850		HHP2	heptahelical transmembrane pr...		Potri.018G102400 [exp]	15.87	0.8081
AT3G66658		ALDH22A1	aldehyde dehydrogenase 22A1 (....		Potri.008G106000 [exp]	18.11	0.8701	ALDH22.1

Compare expression of checked genes

Potri.003G038800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.