Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ACE.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72970 808 / 0 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT1G12570 561 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51950 540 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT3G56060 539 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51930 491 / 2e-168 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G73050 448 / 5e-152 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14190 395 / 5e-132 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14185 387 / 1e-128 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G200800 [exp] 1034 / 0 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.001G111500 [exp] 657 / 0 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G009600 [exp] 454 / 3e-154 AT1G73050 785 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.012G135200 [exp] 410 / 1e-138 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.010G168200 [exp] 380 / 1e-125 AT1G14190 598 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168100 [exp] 375 / 9e-124 AT1G14185 654 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G087400 [exp] 372 / 2e-122 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G249501 [exp] 87 / 4e-20 AT1G73050 164 / 7e-49 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003176 [exp] 931 / 0 AT1G72970 822 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10015623 [exp] 876 / 0 AT1G72970 777 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10037640 [exp] 870 / 0 AT1G72970 768 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10024487 [exp] 637 / 0 AT1G12570 709 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10017827 [exp] 615 / 0 AT1G12570 710 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10002957 [exp] 608 / 0 AT1G12570 701 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10031663 [exp] 523 / 2e-180 AT5G51950 694 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10027406 [exp] 521 / 9e-180 AT5G51950 694 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10015012 [exp] 514 / 2e-177 AT5G51950 667 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10038891 [exp] 502 / 5e-172 AT5G51950 668 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00732 [poplar] [flax] GMC_oxred_N GMC oxidoreductase CL0063 [poplar] [flax] PF05199 [poplar] [flax] GMC_oxred_C GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.003G039000.1 pacid=42785989 polypeptide=Potri.003G039000.1.p locus=Potri.003G039000 ID=Potri.003G039000.1.v4.1 annot-version=v4.1 ATGGCTTCTGTTTGCGCACTACTGAACCAGCTCTTTCTCTTCCTCCTTCTATGGCTTTATACTCTCTCTTCTTCTCAAGCTGTGCACCACCAGTACAACT CTGAATTTAGATACCCATTTATCAAGAAAGCAAGCTCATTCTCATCATCCTTGTCATCAAGTGGCCGGGGAGATCATACATATGACTATATAGTTGTGGG AGGTGGCACAGCTGGGTGTCCTTTAGCCGCCACACTCTCTCAGAAATTCAATGTTTTATTGCTTGAAAGAGGTGGAATGCCTTTTGGCAATGCAAATATC TCCTTATTACAGAACTTCCATATTACCCTTACTGATACTTCATCAACTTCTGCTTCCCAATACTTCATTTCTACTGATGGAGTCCTCAATTCTAGGGCTA GAGTTTTGGGTGGTGGTACTTGCATCAATGCTGGGTTCTACACTAGAGCAAGCACAAGGTTTATAAACAAAGTTGGTTGGGATTTGAAGTTGGTGAACAA GTCATACTCCTGGGTTGAGAAGCAGATTGTTCACAGGCCTAAGGTTGCACCGTGGCAGGTTGTTGTAAGGGACAGTCTTTTGGATCTTGGAGTTGCACCT TTCAATGGATTCACTTATGATCACATTTATGGAACCAAGTTTGGTGGTACCATTTTTGACCGATTCGGTCGTCGGCACACGGCTGCCGAACTACTTGCTT CTGCTGATCCTCATAAGCTCACTGTGTTGGTGCACGCCACAGTCCAAAAGGTTTTATTTGACACATCAGGAAAGCGACCAAAAGCAGCTGGAGTCCTATT CAGAGATGAAAATGGAAACCAGCATCAAGCATTTCTATCAAACAGCCTGAGTGAAGTAATATTGTCATGTGGAGCCATTGGCACCCCTCAGATGCTATTG CTCAGTGGTGTTGGCCCAAAAGCTGAACTTAAGGAGATGAAAATTTCAGTGGTCCTCAACAATAAGTTTGTTGGGCAAGGCATGGCTGATAACCCCTTGA ACTCAGTTTTCGTTCCTTCTAAAAAACCAGTAAAGCAGTCCCTCATTCAAACTGTAGGGATTACCAAGATGGGTGTGTACATTGAAGCTAGCAGTGGATT TGGGCAGTCCAAGGACAGCATACAATGTCACCATGGAATAGTATCTGCAGAGATAGGGCAACTATCAACCATACCTCCAAAGCAAAGAACACCTGAGGCC ATCCAAGCATACATTAGACGAAAGAAGGACATACCACATGAGGCATTCAGAGGAGGCTTTATCCTTGAAAAGATTTCCAACCCCATTTCCACTGGCAAGC TCAAATTGATCAACACAAATGTTGAAGATAACCCTTCTGTCACCTTCAACTACTTTAAACATCCACATGATTTACAACGTTGTGTTGATGGTATTCGCAT GGCTACAAAGATGGTGCAATCAGAACACTTTACAAATTTTACGCAATGTGACAAGCAGACCACAGACAAGATTCTTAACATGAGTGTCAGTGCTAATGTT AACCTTATACCTAAGCATACCAATGACACCAAGTCCCTAGAGCAGTTCTGCAAAGACACCGTACTCTCAATTTGGCACTATCATGGTGGGTGTCATGTTG GCAAGGTTGTGGACCGTGAGCACAAAGTTCTTGCTGTGCACAGGCTTCGCATTGTAGATGGATCAGTATTTGATGAATCTCCTGGGACTAATCCTCAAGC CACCATCCTGATGATGGGCAGGTATATGGGACTGAAAATCTTGAGAGACAGACTAGGAAAAGCAGCTGGTGTTTAG
AA sequence Show only first row Show all	>Potri.003G039000.1 pacid=42785989 polypeptide=Potri.003G039000.1.p locus=Potri.003G039000 ID=Potri.003G039000.1.v4.1 annot-version=v4.1 MASVCALLNQLFLFLLLWLYTLSSSQAVHHQYNSEFRYPFIKKASSFSSSLSSSGRGDHTYDYIVVGGGTAGCPLAATLSQKFNVLLLERGGMPFGNANI SLLQNFHITLTDTSSTSASQYFISTDGVLNSRARVLGGGTCINAGFYTRASTRFINKVGWDLKLVNKSYSWVEKQIVHRPKVAPWQVVVRDSLLDLGVAP FNGFTYDHIYGTKFGGTIFDRFGRRHTAAELLASADPHKLTVLVHATVQKVLFDTSGKRPKAAGVLFRDENGNQHQAFLSNSLSEVILSCGAIGTPQMLL LSGVGPKAELKEMKISVVLNNKFVGQGMADNPLNSVFVPSKKPVKQSLIQTVGITKMGVYIEASSGFGQSKDSIQCHHGIVSAEIGQLSTIPPKQRTPEA IQAYIRRKKDIPHEAFRGGFILEKISNPISTGKLKLINTNVEDNPSVTFNYFKHPHDLQRCVDGIRMATKMVQSEHFTNFTQCDKQTTDKILNMSVSANV NLIPKHTNDTKSLEQFCKDTVLSIWHYHGGCHVGKVVDREHKVLAVHRLRIVDGSVFDESPGTNPQATILMMGRYMGLKILRDRLGKAAGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Potri.003G039000 [exp]	0	1	ACE.1
AT1G67030	C2H2ZnF	ZFP6	zinc finger protein 6 (.1)		Potri.002G199200 [exp]	10.04	0.8935
AT2G15580			RING/U-box superfamily protein...		Potri.006G190300 [exp]	15.62	0.8827
AT5G44005			unknown protein		Potri.014G192100 [exp]	22.89	0.7905
AT5G18020			SAUR-like auxin-responsive pro...		Potri.009G126400 [exp]	23.30	0.8712
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Potri.004G123200 [exp]	27.27	0.8672	Pt-EXP2.4
AT2G47450		CPSRP43, CAO	CHLOROPLAST SIGNAL RECOGNITION...		Potri.004G180766 [exp]	32.40	0.7569
					Potri.011G006500 [exp]	33.58	0.8642
AT1G29450			SAUR-like auxin-responsive pro...		Potri.004G181500 [exp]	36.66	0.8642
AT5G62680			Major facilitator superfamily ...		Potri.001G376966 [exp]	41.56	0.8105
AT5G65550			UDP-Glycosyltransferase superf...		Potri.008G024801 [exp]	45.05	0.7627

Compare expression of checked genes

Potri.003G039000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.