Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56890 698 / 0 Protein kinase superfamily protein (.1) AT2G20300 547 / 0 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) AT4G02010 342 / 2e-105 Protein kinase superfamily protein (.1) AT1G20650 285 / 5e-88 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT5G13160 285 / 6e-87 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT3G20530 282 / 6e-87 Protein kinase superfamily protein (.1) AT1G76370 281 / 9e-87 Protein kinase superfamily protein (.1) AT5G18610 281 / 5e-85 Protein kinase superfamily protein (.1.2) AT5G02800 277 / 5e-85 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G28690 271 / 2e-82 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G152000 [exp] 753 / 0 AT5G56890 846 / 0.0 Protein kinase superfamily protein (.1) Potri.018G068100 [exp] 738 / 0 AT5G56890 801 / 0.0 Protein kinase superfamily protein (.1) Potri.014G194300 [exp] 561 / 0 AT2G20300 966 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.002G254600 [exp] 558 / 0 AT2G20300 947 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.002G194700 [exp] 348 / 1e-107 AT4G02010 958 / 0.0 Protein kinase superfamily protein (.1) Potri.014G119100 [exp] 343 / 1e-105 AT4G02010 993 / 0.0 Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 301 / 3e-93 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 298 / 4e-92 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.011G137000 [exp] 286 / 2e-88 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027635 [exp] 748 / 0 AT5G56890 887 / 0.0 Protein kinase superfamily protein (.1) Lus10011933 [exp] 731 / 0 AT5G56890 880 / 0.0 Protein kinase superfamily protein (.1) Lus10011917 [exp] 556 / 0 AT2G20300 951 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Lus10022848 [exp] 530 / 4e-177 AT2G20300 912 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Lus10011466 [exp] 340 / 4e-99 AT2G47330 1110 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037526 [exp] 313 / 8e-95 AT4G02010 865 / 0.0 Protein kinase superfamily protein (.1) Lus10015756 [exp] 299 / 3e-92 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10023473 [exp] 283 / 5e-87 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 281 / 2e-86 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019621 [exp] 279 / 7e-86 AT3G20530 536 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.003G039100.3 pacid=42784953 polypeptide=Potri.003G039100.3.p locus=Potri.003G039100 ID=Potri.003G039100.3.v4.1 annot-version=v4.1 ATGGGGATGCAGCTGGAGGGTTTTGTGCTGGTGATCATGTTCGTAGTTGGTGGTGCTTTGTCTGTTCTTGGATCTCCAGTACCAGTTGCACCGTCACCAA GCAGATTGCCTCAAAAGCCCCCTACTGCTTCCCCAATCAGGCCAAGCCAACAGCCGTCCATTCAACCAGACCCTGCCTTCTATTCAAAGCAAGCTCCTTC CAACCTCAGTAGGGGAAGACATAGAAACAAAGGTGTCACACCTTCTTACAAAGCGTCCCACATTTCATCATCTTCGGATCACTCTCCAACTAAAGTTGTA GCTCCTCATCCACACTATGCCATTAGGCCTTCAAGTATTGCACTTGCACCTTCTATTTCATCTTTTGGAACTCCTGCAAAAGAATGGGTTCACAGACCTG CATATTCTCCTTCAATCTCAAATCACAGACACCATGGTCGTGGAAGGAACCATGTCAAAATTCCTGAACCATCCTACCGAATCCCTCCCCCCGAATATAA CCCACTTGGCCCTTCTGCCTCTCCATTTCCATCAATGAGCTGGGAGTCTCCTGTACCTGCTTTATCACCTGCAAGCAATTTTACCATGCGCTCTCATCCA CCTGCAATGTCTCCTTTTGATCCATCCTTGAAGAAGATGAAGGCTCCACCACCATTACAGATTCTGACTCTGCCACCTCCACCTCCTAATGAAGATTGTA CATCACCAACATGTTCAGAGCCATTAACATATACGCCTGCTGGATCACCCTGTGGATGTGTGTGGCCAATTCAAGTTAAACTCCGTTTTAGTGTCGCAAT AGACACATTCTTCACTTTGGTTACAGAGTTAGCTGAGGAAATTGCAGCAAGTGTTGCACTAAACCACAGCCAAGTCCGCATCATGGGAGCAAATGCTGCT AGTCAGGAGCTAGAGAAAAGCACTGTTCTCATCAACCTGGTTCCACGAGGAGTAAAATTTGATGATTCTTCTGCATTTTCAATCTACAAGAAATTTTGGA ACAGACAAGTTCTCATAAAGCCTTCCCTCTTTGGTGCCTATGAAGTATTATATGTTCACTATCCAGGTCTTCCACCATCTCCACCTTCACCTGAGAGCAC TTCTACTGTTGATGACGGACCATATACCGGCCATGATAACAATGGAAGGACAAATAAACCTTTAGGAGTTGATGTACCAAGGAGGAAAAAAAAGGGGCTT GGTGGAAGCATGGTGGCTGTAATAGTTCTCTCTTCTTTCACTGTCTTGGTTATATGCATGGCAATTGCTTGGCTTTTGCTGTTGAAATGTGGAACTCAGG TTCATGAACCTCAACAAGTTCTACAGGAATTAGAGTCCTCACCAGTAAAAGCGTCAGGGGCTACTGGGCCTATGATTTTTGGAAGTATGCCCACTTCTGA ATCTATGTCCCTCAGCTCTGGGGCAATGACATATACGGGATCTGCAAAGACATTTACTTTGAATGACATAGAGAGAGCCACCAATAGCTTTGATGCTTCA CGAATCCTCGGAGAAGGTGGGTTTGGGCTTGTCTACGGTGGCTTGTTAGATGATGGAAGAGAAGTGGCTGTGAAGGTCTTAAAGAGAGATGACCAGCATG GTGGCCGTGAATTCTTGGCAGAAGTTGAGATGCTCAGCCGTCTGCATCACAGAAACCTTGTTAAATTGGTTGGTATTTGCACAGAAGGCCATACCCGTTG CCTGGTGTATGAACTTATTCCAAATGGAAGTGTCGAATCACATTTACATGGAGTTGACCAGGAAACAGATCCACTTGACTGGGATGCCCGGATGAAGATT GCCCTAGGTGCAGCTCGGGGCCTAGCATATTTGCACGAAGACTCAAGCCCTAGCGTGATTCATCGAGACTTCAAGTCTAGTAACATACTGTTAGAACCTG ATTTTACACCTAAAGTTTCAGATTTTGGCTTGGCTAAGGCAGCAGTGGATGGGGGAAATAAACACATATCCACACATATTATGGGAACTTTTGGTTATTT GGCACCAGAGTATGCAATGATGGGTCACCTTCTGGTGAAGAGTGATGTTTACAGCTATGGTGTAGTCCTCCTTGAGCTCCTAACCGGACGGAAACCTGTA GATTTGTCTCAACCACCAGGTCAAGAAAATCTTGTTGTGTATGCTCGCCCGCTCCTCACATGCAAGGAGGGCTTAGAAGCGATAGTAGACCCAACTATAA GGTCCTCCGTCTCATTTGATACCATCACCAAAGTAGCAGCAATTGCATCAATGTGTGTGCAACCAGAAGTTTCTCACCGCCCTTTTATGGGTGAAGTGGT TCAGGCCCTGAAGCTTGTTTGTAATGAGTTTGATGAAGCAAATATGCAGAGGTCAAGAAGTTGCAGCCATGAGAATCTTCTAATTGATTTAGAAAGTAAG GATGAAGTTTCAGGTGAGAACATAGAAAGTTCACACCCTGTGCCATTATCGAAATCTGATTTGTTGACCACATCTATGGGATTTGAGGGTCAAGAAGTTG GGTCCTTTAGGAGACATGCTAGCTCAGGGACTTTGAGAATAGGAAGAAGGCATTTCTGGCAGAGATTAAGAAATTTATCCAGAGGCAGCATGAGTGAGCA TGGATTTTCTCATAAATTATGGCCATGA
AA sequence Show only first row Show all	>Potri.003G039100.3 pacid=42784953 polypeptide=Potri.003G039100.3.p locus=Potri.003G039100 ID=Potri.003G039100.3.v4.1 annot-version=v4.1 MGMQLEGFVLVIMFVVGGALSVLGSPVPVAPSPSRLPQKPPTASPIRPSQQPSIQPDPAFYSKQAPSNLSRGRHRNKGVTPSYKASHISSSSDHSPTKVV APHPHYAIRPSSIALAPSISSFGTPAKEWVHRPAYSPSISNHRHHGRGRNHVKIPEPSYRIPPPEYNPLGPSASPFPSMSWESPVPALSPASNFTMRSHP PAMSPFDPSLKKMKAPPPLQILTLPPPPPNEDCTSPTCSEPLTYTPAGSPCGCVWPIQVKLRFSVAIDTFFTLVTELAEEIAASVALNHSQVRIMGANAA SQELEKSTVLINLVPRGVKFDDSSAFSIYKKFWNRQVLIKPSLFGAYEVLYVHYPGLPPSPPSPESTSTVDDGPYTGHDNNGRTNKPLGVDVPRRKKKGL GGSMVAVIVLSSFTVLVICMAIAWLLLLKCGTQVHEPQQVLQELESSPVKASGATGPMIFGSMPTSESMSLSSGAMTYTGSAKTFTLNDIERATNSFDAS RILGEGGFGLVYGGLLDDGREVAVKVLKRDDQHGGREFLAEVEMLSRLHHRNLVKLVGICTEGHTRCLVYELIPNGSVESHLHGVDQETDPLDWDARMKI ALGAARGLAYLHEDSSPSVIHRDFKSSNILLEPDFTPKVSDFGLAKAAVDGGNKHISTHIMGTFGYLAPEYAMMGHLLVKSDVYSYGVVLLELLTGRKPV DLSQPPGQENLVVYARPLLTCKEGLEAIVDPTIRSSVSFDTITKVAAIASMCVQPEVSHRPFMGEVVQALKLVCNEFDEANMQRSRSCSHENLLIDLESK DEVSGENIESSHPVPLSKSDLLTTSMGFEGQEVGSFRRHASSGTLRIGRRHFWQRLRNLSRGSMSEHGFSHKLWP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56890			Protein kinase superfamily pro...		Potri.003G039100 [exp]	0	1
AT1G63020		SMD2, PolIVa, S...	SILENCING MOVEMENT DEFICIENT 2...		Potri.001G111300 [exp]	7.14	0.8301
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Potri.006G188800 [exp]	14.42	0.8082	DCL905
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Potri.001G003900 [exp]	14.73	0.7947
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.011G165700 [exp]	14.79	0.8093
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Potri.006G132400 [exp]	14.96	0.7771
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.001G135300 [exp]	19.79	0.7672
AT1G27900			RNA helicase family protein (....		Potri.010G057200 [exp]	20.00	0.7854
AT1G20670			DNA-binding bromodomain-contai...		Potri.009G167500 [exp]	24.59	0.7812
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Potri.001G216900 [exp]	28.72	0.7588
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Potri.002G024100 [exp]	34.91	0.7716	XRN2.1

Compare expression of checked genes

Potri.003G039100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.