Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13860 809 / 0 HSP60-3A heat shock protein 60-3A (.1) AT3G23990 711 / 0 HSP60-3B, HSP60 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) AT2G33210 696 / 0 HSP60-2 heat shock protein 60-2 (.1.2) AT5G56500 374 / 1e-122 Cpn60beta3 chaperonin-60beta3, TCP-1/cpn60 chaperonin family protein (.1.2) AT1G55490 369 / 9e-121 Cpn60beta1, LEN1, CPN60B LESION INITIATION 1, chaperonin-60beta1, chaperonin 60 beta (.1.2) AT3G13470 367 / 7e-120 Cpn60beta2 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) AT2G28000 348 / 1e-112 Cpn60alpha1, SLP, CH-CPN60A, CPN60A SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) AT1G26230 342 / 8e-110 Cpn60beta4 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) AT5G18820 270 / 6e-83 Cpn60alpha2, EMB3007 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) AT5G20890 51 / 1e-06 TCP-1/cpn60 chaperonin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G054400 [exp] 719 / 0 AT3G23990 1018 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.003G173900 [exp] 719 / 0 AT3G23990 1016 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.002G252900 [exp] 707 / 0 AT3G23990 995 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.003G222400 [exp] 376 / 3e-123 AT3G13470 1033 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.009G009300 [exp] 372 / 5e-122 AT2G28000 919 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.001G002500 [exp] 373 / 6e-122 AT3G13470 1030 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.004G213400 [exp] 365 / 3e-119 AT2G28000 964 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.010G135100 [exp] 329 / 3e-105 AT1G26230 813 / 0.0 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) Potri.015G122800 [exp] 311 / 1e-98 AT5G18820 821 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003791 [exp] 785 / 0 AT3G13860 867 / 0.0 heat shock protein 60-3A (.1) Lus10011898 [exp] 711 / 0 AT3G23990 987 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10022832 [exp] 708 / 0 AT3G23990 980 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011770 [exp] 707 / 0 AT3G23990 994 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011902 [exp] 706 / 0 AT3G23990 964 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10010321 [exp] 369 / 1e-119 AT3G13470 1041 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Lus10013404 [exp] 367 / 1e-119 AT3G13470 1037 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Lus10037386 [exp] 349 / 6e-113 AT2G28000 960 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Lus10030917 [exp] 325 / 3e-103 AT1G26230 863 / 0.0 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) Lus10038352 [exp] 297 / 6e-93 AT5G18820 767 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [poplar] [flax] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Potri.003G039475.1 pacid=42784624 polypeptide=Potri.003G039475.1.p locus=Potri.003G039475 ID=Potri.003G039475.1.v4.1 annot-version=v4.1 ATGTATAGGATTGCTTCAAGATTAGCTTCATCAATTGGGGTCACATACAGTAGAAGTTATGTGGCTAAGGATATCAATTTTGGAGTTGGGGCTCGTGCAG CTATGCTACAGGGTGTCAATGAGGTTGCAGAAGCCGTGAAAGTCACAATGGGACCAAAGGGCCGCCATGTTATTATTGAAAAAAGCCGGGGGCTTCCAAA GGTGACCAAGGATGGAGTCACTGTTGCCAAAAGCATCAAGTTCAAGGAAAAGGCGAAGAGTGTTGGTGCAGACCTTGTGAAGCAGGTCGCAAATGCTACT AATACTGCCACGGGGGATGGTACAACTTGTGCAACTGTCCTGACTCAGGCTATACTCGTCGAAGGCTGCAAGTCTGTATCTGCTGGTGTGAATGTGATGG ATTTGCGTAGTGGCATCAATATTGCGGTTGGTGGTGTCCTTTCAGACTTGAAAAAGAGAGCATTGATGATAAGCACACCAGAAGAAATTACTCAGGTTGC CACTATCTCTGCAAATGGTGAACGTGAGATTGGAGAAATGATAGCAAGAGCAATGGAGAAAGTTGGAAAGCATGGAGTGATTACTGTCACTGATGGGAAT ACTTTGGATAATGAGTTGGAAGTTGTTGAAGGAATGAAGCTAGCTAGAGGCTATATTTCTCCCTATTTTATTACTGATAAGAAGACCCAGAAATGTGCAA ATATAAGTTATGAATGGCCTCCTTTTGTTTTTGATCTCTCACTCACCATTGTTTTGGGTTCACCAGAACTTGAAAATCCATTAATCCTCATTTATGACAA AAAGATTTCAGACATGAACTCACTTCTGAGAGTATTAGAGCTGGCAGTCAAAAAAAGCAGAGCACTTTTTATCGTAGCTGAGGATGTTGAGAGTGATTCC TTAGCCATGCTTATTCTCAATATGCATCGAGCTGGACTTAAGGTCTGTGCCATTAAAGCTCCTGGTTTTGGGGAAAACAGACAAGCAAATTTGGATGATC TTGCTGTTTTAACTGGTGTAGAGGTTATCAGTGAAAATCGTGGTTTAACCCTTGATAAAGTCCAAATTGAAATGCTTGGTACTGCTAAGAAGGTCACAGT GTCACTTGATGATACAATAGTTCTTCATGGTTGCGGAGAAAAGAAATTGATTGAAGAAAGATGTGAGCAGCTAAGGACAGCCATAGAGAAGAGTACTGCC TTGTTTGACCAGGAGAAAGCTCAGGAACGACTGTCAAAGCTATCTGGTGGTGTTGCTGTCTTCAAGGTTGGTGGTGCCAGTGAGGCAGAAGTTGGAGAGA GGAAAGATAGGGTTACAGATGCATTGAATGCTAGTAGAGCAGCAGTGGAAGAGGGTATTGTGCCAGGTGGTGGTGTTGCTCTTTTGTATTCCACAAAAGC TCTGGAAAAACTTCAAGCTCAGAATGAAGATGAAAAAAGAGGCATTCAACTAATCCAGAACGCCCTCAAGGCGCCGGCACATACAATAGTTTCAAACGCT GGATTTGATTCTGCTATGGTTCTTGGCAAATTGTTGGAGCAAGATGATTATAATTTGGGTTACGATGCTGCTAAAGGTGAATACGTCGAGATGGTGAAAG CTGGAATTATAGATTCCTTCAAAGTCATCAGGACAGCCATGGTAGATGCCGCCAGTGTTTCTTTGCTATTGACAACAACTGAGGCGACTGTTTTGGAGAA TCCACAGGAGAAAAAACCACCCAGTCGAATGCCAAATATGGGTGATATGGGCTGTTAG
AA sequence Show only first row Show all	>Potri.003G039475.1 pacid=42784624 polypeptide=Potri.003G039475.1.p locus=Potri.003G039475 ID=Potri.003G039475.1.v4.1 annot-version=v4.1 MYRIASRLASSIGVTYSRSYVAKDINFGVGARAAMLQGVNEVAEAVKVTMGPKGRHVIIEKSRGLPKVTKDGVTVAKSIKFKEKAKSVGADLVKQVANAT NTATGDGTTCATVLTQAILVEGCKSVSAGVNVMDLRSGINIAVGGVLSDLKKRALMISTPEEITQVATISANGEREIGEMIARAMEKVGKHGVITVTDGN TLDNELEVVEGMKLARGYISPYFITDKKTQKCANISYEWPPFVFDLSLTIVLGSPELENPLILIYDKKISDMNSLLRVLELAVKKSRALFIVAEDVESDS LAMLILNMHRAGLKVCAIKAPGFGENRQANLDDLAVLTGVEVISENRGLTLDKVQIEMLGTAKKVTVSLDDTIVLHGCGEKKLIEERCEQLRTAIEKSTA LFDQEKAQERLSKLSGGVAVFKVGGASEAEVGERKDRVTDALNASRAAVEEGIVPGGGVALLYSTKALEKLQAQNEDEKRGIQLIQNALKAPAHTIVSNA GFDSAMVLGKLLEQDDYNLGYDAAKGEYVEMVKAGIIDSFKVIRTAMVDAASVSLLLTTTEATVLENPQEKKPPSRMPNMGDMGC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13860		HSP60-3A	heat shock protein 60-3A (.1)		Potri.003G039475 [exp]	0	1
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Potri.005G125300 [exp]	3.46	0.9105
					Potri.005G067901 [exp]	3.74	0.9023
AT5G17910			unknown protein		Potri.019G044500 [exp]	4.69	0.8862
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Potri.006G220900 [exp]	5.09	0.8790
AT3G19780			unknown protein		Potri.007G070400 [exp]	5.56	0.8435
AT2G18220			Noc2p family (.1)		Potri.003G213450 [exp]	8.48	0.8928
AT1G29370			Kinase-related protein of unkn...		Potri.005G202851 [exp]	8.66	0.8753
AT1G62530			Plant protein of unknown funct...		Potri.001G121200 [exp]	8.83	0.8405
AT5G10070			RNase L inhibitor protein-rela...		Potri.007G087000 [exp]	9.48	0.8650
AT1G09730			Cysteine proteinases superfami...		Potri.007G115400 [exp]	10.19	0.8517

Compare expression of checked genes

Potri.003G039475 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.