Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13850 184 / 7e-56 AS2 LBD22 LOB domain-containing protein 22 (.1) AT1G72980 123 / 3e-33 AS2 LBD7 LOB domain-containing protein 7 (.1) AT3G47870 120 / 7e-31 AS2 ASL29, SCP, LBD27 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) AT5G63090 108 / 5e-28 AS2 LOBB, LOB Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT3G27650 102 / 5e-26 AS2 LBD25 LOB domain-containing protein 25 (.1) AT1G65620 99 / 2e-24 AS2 AS2 ASYMMETRIC LEAVES 2, Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) AT3G50510 99 / 3e-24 AS2 LBD28 LOB domain-containing protein 28 (.1) AT2G30130 94 / 2e-22 AS2 PCK1, LBD12, ASL5 PEACOCK 1, Lateral organ boundaries (LOB) domain family protein (.1) AT3G26620 92 / 2e-22 AS2 LBD23 LOB domain-containing protein 23 (.1) AT3G26660 92 / 2e-22 AS2 LBD24 LOB domain-containing protein 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G196400 [exp] 362 / 2e-125 AT3G13850 184 / 3e-57 LOB domain-containing protein 22 (.1) Potri.015G066700 [exp] 130 / 2e-35 AT3G47870 191 / 2e-59 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Potri.012G072000 [exp] 125 / 1e-33 AT3G47870 180 / 7e-55 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Potri.018G052700 [exp] 109 / 6e-28 AT3G13850 85 / 1e-19 LOB domain-containing protein 22 (.1) Potri.001G345700 [exp] 104 / 7e-27 AT3G27650 208 / 5e-70 LOB domain-containing protein 25 (.1) Potri.012G083500 [exp] 105 / 9e-27 AT5G63090 223 / 4e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.015G082200 [exp] 103 / 2e-26 AT5G63090 223 / 4e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Potri.006G228301 [exp] 106 / 5e-26 AT1G31320 111 / 1e-29 LOB domain-containing protein 4 (.1) Potri.013G123900 [exp] 101 / 7e-25 AT1G06280 135 / 2e-39 LOB domain-containing protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003789 [exp] 188 / 2e-57 AT3G13850 162 / 7e-49 LOB domain-containing protein 22 (.1) Lus10002513 [exp] 161 / 4e-47 AT3G13850 161 / 1e-48 LOB domain-containing protein 22 (.1) Lus10013510 [exp] 145 / 3e-41 AT3G13850 143 / 1e-41 LOB domain-containing protein 22 (.1) Lus10008629 [exp] 123 / 2e-32 AT3G47870 175 / 2e-52 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Lus10033111 [exp] 119 / 1e-30 AT3G47870 194 / 5e-60 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Lus10036665 [exp] 117 / 6e-30 AT3G47870 182 / 2e-55 SIDECAR POLLEN, ASYMMETRIC LEAVES 2-like 29, LOB domain-containing protein 27 (.1) Lus10022264 [exp] 103 / 6e-26 AT5G63090 223 / 9e-75 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Lus10039940 [exp] 102 / 9e-26 AT5G63090 236 / 5e-80 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Lus10027676 [exp] 102 / 1e-25 AT5G63090 233 / 8e-79 Lateral organ boundaries (LOB) domain family protein (.1), Lateral organ boundaries (LOB) domain family protein (.2), Lateral organ boundaries (LOB) domain family protein (.3), Lateral organ boundaries (LOB) domain family protein (.4) Lus10040638 [exp] 100 / 4e-25 AT1G31320 244 / 1e-83 LOB domain-containing protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03195 [poplar] [flax] LOB Lateral organ boundaries (LOB) domain
Representative CDS sequence Show only first row Show all	>Potri.003G039700.2 pacid=42785066 polypeptide=Potri.003G039700.2.p locus=Potri.003G039700 ID=Potri.003G039700.2.v4.1 annot-version=v4.1 ATGATCTGTCTCTCTCTGGGTTGTCATATATCATCATCATCATATGTGTTTGTTTCTCGTCTTGTTTTTCTCTCCGTCCTCCAAGAAAGGGATCCTTGGT TTGTTGGCAGGGAGAAAAGAAAGGATCTAAAAGCAGCAGCAGAGCGAAAAAGAAGAGAGAAACCATTTCTAAATAAGAAAACAGCACCAGCCCCGCCGGC AACGCATCCGAATTCTCTCGTCATCTCTAAAACAACAATAGCAAACAGCAAAAATATGAGCAATATTTCAAGGACTGGTAACAGCACCACCCAGGCTTGT GCAGCTTGCAAATACCAACGCAGGAAGTGCGCTCCTGACTGCATTCTCGCCCCTTATTTCCCTCACAATCGCCAGAGACAATTCCTCAATGCCCATAAAT TGTTTGGTGTTAGCAACATTAGCAAGATCATCAAGAACCTTAACCCTCCCGAGAAGGACGAAGCCATGCGTACCATCATCTTTCAATCAGATGTCCGTGC AAATGATCCCGTCGGAGGATGTTATCGAATGATTCGAGAACTCCAACGTCAAATTGAATACACTAGGGCTGAACTTGATTTTGTTCTTCATCACCTTGCT ATATATCGTGCCCAGGCTGCAGCCCAACAGCAGACTCAATTGATTCAAGCACAAGCAGCAGCAGCTGCCGCTGCCGCAGCCCCTGATCATCAGACCGATC ATGACTGCCAAAGTATCATTATTACAGATACTTTCGACATGTACGATCCAGTCATGCAATATCATGATCAATACCCACAAGAACATCAAGATCAACAAGA ATTTGTTATTCATAATCCAGATAACAATCAACTACATTTACAAGATCAAGATCCTGCAAATGCATGGGCCACCGCGGCCAACGTGCAGGATATTTCTAAC TTGTCGATATCATCATCGCCTAATTACTTAGATGATCAGCTTAAGCAAACTTATAACGGTGATGATCACTGTAGTACGCAAGATGATAATTTGAAGCCGA TTCTTGATGTAAACGACGACGTCAACTTTGAGCCTGATGATCAAGATCAGGTAGTAGATATGAGGTTTGTGCCATCCACGCAGTTACTTATGTCATCGTA G
AA sequence Show only first row Show all	>Potri.003G039700.2 pacid=42785066 polypeptide=Potri.003G039700.2.p locus=Potri.003G039700 ID=Potri.003G039700.2.v4.1 annot-version=v4.1 MICLSLGCHISSSSYVFVSRLVFLSVLQERDPWFVGREKRKDLKAAAERKRREKPFLNKKTAPAPPATHPNSLVISKTTIANSKNMSNISRTGNSTTQAC AACKYQRRKCAPDCILAPYFPHNRQRQFLNAHKLFGVSNISKIIKNLNPPEKDEAMRTIIFQSDVRANDPVGGCYRMIRELQRQIEYTRAELDFVLHHLA IYRAQAAAQQQTQLIQAQAAAAAAAAAPDHQTDHDCQSIIITDTFDMYDPVMQYHDQYPQEHQDQQEFVIHNPDNNQLHLQDQDPANAWATAANVQDISN LSISSSPNYLDDQLKQTYNGDDHCSTQDDNLKPILDVNDDVNFEPDDQDQVVDMRFVPSTQLLMSS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13850	AS2	LBD22	LOB domain-containing protein ...		Potri.003G039700 [exp]	0	1
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.001G298900 [exp]	6.32	0.8764
					Potri.011G134400 [exp]	8.48	0.8665
AT5G53310			myosin heavy chain-related (.1...		Potri.015G023400 [exp]	8.77	0.8754
AT1G57790			F-box family protein (.1)		Potri.012G106800 [exp]	11.13	0.8941
AT5G17620			unknown protein		Potri.013G072300 [exp]	12.48	0.8929
AT5G24400		PGL3, EMB2024	6-PHOSPHOGLUCONOLACTONASE 3, E...		Potri.015G008401 [exp]	12.84	0.8694
					Potri.008G089401 [exp]	13.96	0.8853
AT5G55090		MAPKKK15	mitogen-activated protein kina...		Potri.003G130000 [exp]	14.42	0.8568
					Potri.011G134500 [exp]	15.74	0.8529
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Potri.001G080000 [exp]	16.97	0.8791

Compare expression of checked genes

Potri.003G039700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.