Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17650 508 / 0 GR2, GLYR2 glyoxylate reductase 2 (.1) AT3G25530 328 / 6e-112 GR1, GLYR1, GHBDH, ATGHBDH glyoxylate reductase 1 (.1.2) AT4G29120 145 / 2e-40 6-phosphogluconate dehydrogenase family protein (.1) AT4G20930 122 / 1e-31 6-phosphogluconate dehydrogenase family protein (.1) AT1G71170 111 / 4e-28 6-phosphogluconate dehydrogenase family protein (.1) AT1G71180 99 / 2e-23 6-phosphogluconate dehydrogenase family protein (.1) AT1G18270 88 / 1e-18 ketose-bisphosphate aldolase class-II family protein (.1.2.3) AT1G64190 45 / 8e-05 6-phosphogluconate dehydrogenase family protein (.1) AT5G41670 43 / 0.0002 6-phosphogluconate dehydrogenase family protein (.1.2) AT3G02360 42 / 0.0008 6-phosphogluconate dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G197900 [exp] 323 / 3e-110 AT3G25530 463 / 1e-166 glyoxylate reductase 1 (.1.2) Potri.003G038450 [exp] 263 / 3e-88 AT1G17650 217 / 8e-71 glyoxylate reductase 2 (.1) Potri.003G036600 [exp] 169 / 1e-52 AT1G17650 158 / 5e-49 glyoxylate reductase 2 (.1) Potri.018G088000 [exp] 145 / 2e-40 AT4G29120 463 / 8e-165 6-phosphogluconate dehydrogenase family protein (.1) Potri.001G211500 [exp] 135 / 4e-37 AT1G71180 310 / 2e-105 6-phosphogluconate dehydrogenase family protein (.1) Potri.001G465600 [exp] 107 / 3e-26 AT4G20930 507 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Potri.015G037000 [exp] 89 / 5e-19 AT1G18270 1931 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3) Potri.003G135600 [exp] 43 / 0.0003 AT5G41670 889 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.001G095800 [exp] 42 / 0.0004 AT5G41670 897 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015612 [exp] 530 / 0 AT1G17650 495 / 4e-172 glyoxylate reductase 2 (.1) Lus10037629 [exp] 515 / 0 AT1G17650 486 / 9e-174 glyoxylate reductase 2 (.1) Lus10012301 [exp] 288 / 2e-96 AT3G25530 434 / 3e-155 glyoxylate reductase 1 (.1.2) Lus10016077 [exp] 271 / 4e-85 AT3G57220 611 / 0.0 Glycosyl transferase family 4 protein (.1) Lus10001349 [exp] 148 / 1e-41 AT1G71180 335 / 4e-115 6-phosphogluconate dehydrogenase family protein (.1) Lus10012950 [exp] 124 / 1e-32 AT4G29120 456 / 3e-163 6-phosphogluconate dehydrogenase family protein (.1) Lus10023258 [exp] 122 / 2e-31 AT4G20930 479 / 4e-171 6-phosphogluconate dehydrogenase family protein (.1) Lus10038545 [exp] 94 / 2e-21 AT4G20930 451 / 3e-160 6-phosphogluconate dehydrogenase family protein (.1) Lus10002140 [exp] 84 / 3e-17 AT1G18270 1147 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3) Lus10015455 [exp] 80 / 3e-16 AT1G71180 243 / 2e-78 6-phosphogluconate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03446 [poplar] [flax] NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase CL0106 [poplar] [flax] 6PGD_C PF14833 [poplar] [flax] NAD_binding_11 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.003G040800.1 pacid=42786688 polypeptide=Potri.003G040800.1.p locus=Potri.003G040800 ID=Potri.003G040800.1.v4.1 annot-version=v4.1 ATGTCCTTGTTGCTTAAGGCCAGCAACGGTCATCTCTTCTTATCATCATCAATTGCTTCCATGGCAACGTGTTCAAGCTTCTGCGCTCAACTTCCCATCC ATTTTAGACCAATACCCATCGCTTCTTCTTTTCCCACTAATCAACCTTTCAAGCCCTTCTCTGCCCAAGCTTCAATTTCTCCTGCTAATGATGGTGGCTC TCCAAATACTATTGGCTTTCTAGGCCTTGGAATTATGGGTTCTCCAATGGCTCAGAATCTTATAAAATCCGGGTGTGATGTGACTGTTTGGAACAGGACC AAGAGCAAATGTGATCCTCTCATCAGCTTGGGAGCAAAATATAAGCCTTCTCCCGAGGAAGTAACTGCAGCCTGTGATGTCACATTTGCAATGCTTGCTG ATCCAGAATGTGCAGTGGAGGTTGCATGTGGAAAGCATGGAGCTGCAAGTGGTATGGGTCCAGGAAAAGGGTATGTGGATGTTTCAACTGTTGATGGTGG GACTTCTAAATTGATTTGTGGACATATCAAAGCTTCCGGGGCATCATTTTTGGAAGCTCCTGTTTCTGGCTCAAAGAAACCAGCAGAAGATGGGCAACTT ATATTTCTTACTGCAGGTGACAAATCTCTGTATGAAACAGTCGCTCCGTTCTTAGATATCATGGGGAAGTCAAGATTTTACCTTGGGGAAGTCGGAAATG GGGCTGCAATGAAACTTATTGTCAACATGATCATGGGCAGTATGATGGCAACCTTTTCTGAAGGATTGCTTCTCAGCGAGAAAGTAGGACTGGACCCAAA TGTACTGGTTGAGGTAGTGTCTGAGGGTGCCATTAGTGCACCGATGTATTCGCTGAAAGGTCCATCAATGGTCAAATCTCTATACCCCACTGCTTTTCCC TTAAAGCATCAGCAGAAGGACATGAGACTTGCCCTGGGATTAGCAGAATCTGTTTCCCAACCCACTCCAATTGCAGCAGCTGCAAATGAACTATACAAGG TAGCAAAAAGTCACGGGCTTAGCGATAGTGATTTTTCAGCAGTGATTGAAGCACTGAAAGGAAAAGTGCAATCCTGA
AA sequence Show only first row Show all	>Potri.003G040800.1 pacid=42786688 polypeptide=Potri.003G040800.1.p locus=Potri.003G040800 ID=Potri.003G040800.1.v4.1 annot-version=v4.1 MSLLLKASNGHLFLSSSIASMATCSSFCAQLPIHFRPIPIASSFPTNQPFKPFSAQASISPANDGGSPNTIGFLGLGIMGSPMAQNLIKSGCDVTVWNRT KSKCDPLISLGAKYKPSPEEVTAACDVTFAMLADPECAVEVACGKHGAASGMGPGKGYVDVSTVDGGTSKLICGHIKASGASFLEAPVSGSKKPAEDGQL IFLTAGDKSLYETVAPFLDIMGKSRFYLGEVGNGAAMKLIVNMIMGSMMATFSEGLLLSEKVGLDPNVLVEVVSEGAISAPMYSLKGPSMVKSLYPTAFP LKHQQKDMRLALGLAESVSQPTPIAAAANELYKVAKSHGLSDSDFSAVIEALKGKVQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Potri.003G040800 [exp]	0	1
AT5G04900		NOL	NYC1-like (.1)		Potri.008G014200 [exp]	1.73	0.9750
AT1G52510			alpha/beta-Hydrolases superfam...		Potri.001G201500 [exp]	2.00	0.9745
AT4G12830			alpha/beta-Hydrolases superfam...		Potri.014G175700 [exp]	2.44	0.9768
AT1G22700			Tetratricopeptide repeat (TPR)...		Potri.013G114500 [exp]	3.60	0.9684
AT5G55220			trigger factor type chaperone ...		Potri.015G065900 [exp]	3.87	0.9740
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Potri.016G106900 [exp]	4.24	0.9751	FBP.1
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Potri.010G115000 [exp]	4.69	0.9631
AT3G18890		AtTic62	translocon at the inner envelo...		Potri.004G150300 [exp]	5.65	0.9707	Pt-TIC62.1
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Potri.005G130400 [exp]	5.91	0.9715	Pt-PSBO.1
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Potri.004G209700 [exp]	6.92	0.9610

Compare expression of checked genes

Potri.003G040800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.