Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74190 335 / 4e-100 AtRLP15 receptor like protein 15 (.1) AT1G07390 333 / 7e-99 AtRLP1 receptor like protein 1 (.1.2.3) AT2G25470 325 / 1e-96 AtRLP21 receptor like protein 21 (.1) AT5G49290 325 / 1e-96 ATRLP56 receptor like protein 56 (.1) AT1G58190 320 / 5e-94 AtRLP9 receptor like protein 9 (.1.2) AT1G74180 315 / 2e-92 AtRLP14 receptor like protein 14 (.1) AT1G74170 286 / 6e-82 AtRLP13 receptor like protein 13 (.1) AT1G54470 270 / 1e-76 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT5G25910 259 / 1e-73 AtRLP52 receptor like protein 52 (.1) AT4G13920 239 / 5e-66 AtRLP50 receptor like protein 50 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G041600 [exp] 1580 / 0 AT1G74170 333 / 2e-98 receptor like protein 13 (.1) Potri.018G145512 [exp] 1507 / 0 AT2G25470 338 / 5e-101 receptor like protein 21 (.1) Potri.001G065327 [exp] 1486 / 0 AT1G07390 352 / 3e-105 receptor like protein 1 (.1.2.3) Potri.018G144700 [exp] 1473 / 0 AT1G07390 362 / 5e-109 receptor like protein 1 (.1.2.3) Potri.018G148000 [exp] 1469 / 0 AT1G74190 354 / 1e-106 receptor like protein 15 (.1) Potri.001G063909 [exp] 1459 / 0 AT1G74190 333 / 3e-99 receptor like protein 15 (.1) Potri.018G144300 [exp] 1454 / 0 AT2G25470 348 / 8e-105 receptor like protein 21 (.1) Potri.018G145516 [exp] 1452 / 0 AT1G74190 346 / 1e-103 receptor like protein 15 (.1) Potri.018G124400 [exp] 1415 / 0 AT1G07390 342 / 1e-101 receptor like protein 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042381 [exp] 469 / 1e-149 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10030068 [exp] 465 / 1e-149 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10027856 [exp] 434 / 6e-137 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10039529 [exp] 282 / 1e-80 AT2G34930 427 / 1e-134 disease resistance family protein / LRR family protein (.1) Lus10039531 [exp] 280 / 5e-80 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1) Lus10016384 [exp] 276 / 3e-78 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 269 / 7e-76 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10003389 [exp] 267 / 3e-75 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10002755 [exp] 265 / 9e-75 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 260 / 1e-72 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.003G041400.5 pacid=42786539 polypeptide=Potri.003G041400.5.p locus=Potri.003G041400 ID=Potri.003G041400.5.v4.1 annot-version=v4.1 ATGGGTGTGTTCCTTCAGATGTTGACGGTACTGTTAGTAATTATGATGGTTTCCTTGCAAGGATGGCTGCCTCTTGGTTGCTTGGATGAAGAGAGAATCG CTCTCTTGCAGCTCAAAGATTCTCTTAACTATCCCAATGGCACCTCCCTTCCCTCCTGGATAAAAGCTGACGCCCACTGTTGTTCTTGGGAACGTATTGA GTGCAGTACAGGTCGAGTCACCGAACTCCATCTTGAGGAAACAAGGAATGAGGAACTGGGAGATTGGTACTTAAATGCCTCCTTATTACTTCCTTTCCAA GAACTCAAGGCTCTCAACTTGAGGGGTAATCGTCTAGCTGGTTGGGTTGAGAAGAAAGGTGGTTATGAGCTGCAAAGATTGAGAAATTTGGATTACCTTA ACTTGAGATCAAATAGTTTCGATAACAGTATTTTATCATATGTGGAGGGATTTCCGTCTCTTAAATCATTATATTTAGATTATAATAGATTAGAGGGGTT AATAGATTTGAAAGAATCGTTGAGCAGCTTGGAGGTCTTGGGTTTGAGCGGCAATAATATTGACAAATTGGTAGCCTCAAGAGGTCCAAGCAACTTGACT ACTCTATACCTGCATGATATCACAACCTATGAAAGTAGCTTCCAGTTACTGCAATCATTAGGAGCATTCCCAAGCCTCATGACACTTTATCTGAACAAAA ATGATTTTAGAGGAAGAATATTAGGTGACGAGTTGCAAAATTTAAGCTCATTGAAAAGTTTGTATATGGACGGTTGTTCTCTAGATGAACACTCCCTTCA AAGCCTTGGAGCATTGCCTTCTCTAAAAAATCTATTATTGCGAGCACTAAGTGGAAGTGTACCTTCTAGAGGCTTTCTTGATCTCAAGAACTTAGAATAC TTGGATTTGAATTTAAATACTCTAAATAATAGCATCTTCCAAGCCATTAGAATGATGACCTTTCTTAAAGCTTTGAATTTGCATGGCTGCAAACTAGATG GTCGAATACCTCTAGCCCAAGGCTTCCTTAATCTCAAGAACTTGGAACATTTAGATTTGAGTTCCAATACTCTCGATAATAGCATCTTCCAAACCATCGG CCTATGTGACTTAAATCATCTCCAACAACTATATATGTATGACAATGATCTCAGTGGTTTCTTGCCTCCGTGTCTGGCAAATTTGACTTCCCTTCAACAA CTAGATCTCTCTTTCAATCACTTGAAGATCCCTATGTCATTGAGCCCATTATACAACCTTTCAAAACTCAAGTATTTTATTGGTTCAGATAATGAAATAT ACGCAGAAGAAGATGATCATAGTCTGAGCCCAAAGTTCCAGTTAGAGTCCATCTCTTTAAGCAATCGTGGACAAGGTGCAGGAGCATTTCCCAAGTTCCT TTACCATCAGTTCAGCCTGCAATCTTTCGATCTTACAAACATCCAAATAAAGGGAGAGTTTCCAAATTGGTTGATTGAGAACAACACACACCTACATGAT CTTTCTTTGGAAAATTGTTCTCTTTTGGGTCCATTCTTGTTACCAAAGAATTCTCATGTGAATTTGTCATTTCTAAGTATATCCATGAATTACTTCCAAG GCCAAATCCCTTTAGAAATTGGAGCTCGTTTGCCAGGGTTAGAAGTTTTATTTATGTCTAGCAATGGTTTCAATGGAAGCATTCCTTTCTCGTTAGGTAA CATTAGCTCGTTGAAAGGGTTAGACCTGTCCAACAACAGTTTGCAAGGGCAGATCCCTGGATGGATAGGGAATATGTCTTCTCTTGAATTCTTGAACTTA TCAGGGAACAATTTCTCTGGTCGTTTACCACCTAGATTCGACACTTCAAATTTGAGATATGTTTATTTGTCTAGAAATAAGTTGCAAGGACCGATCGCAA TGACATTTTATAACTCCTTTGAGATGTTTGCACTAGATCTTTCCCATAATAATTTAACTGGTAGTATTCCCAAATGGATTGACAGACTATCTAACTTGAG ATTTCTACTCTTGAGTTATAACAATCTTGAAGGTGAAATCCCAATTCGATTATGCAGGTTGGACCAATTAACCCTGATTGATCTATCTCACAACCACTTT TCTGGTAACATCCTCTCTTGGATGATATCTAGTCATCCTTTCCCACAACAATACGATTCCAATGATTATCTGTCCTCATCACAACAATCCTTTGAGTTTA CAACGAAGAATGTGTCCCTTTCTTATAGAGGCAGCATTATCCAGTACTTCACAGGAATTGATTTCTCATGCAACAATTTCATAGGAGAGATTCCTCCTGA AATTGGAAACCTCAGCATGATCAAAGTACTGAACCTTTCGCACAACAGTTTAACGGGACCAATTCCACCAACATTTTCGAACTTAAAAGAAATAGAGAGC TTGGATCTTTCCTACAACAAATTGGATGGAGAAATCCCACCTCAACTTATTGAACTATTTTTTTTAGAGTTTTTCAGTGTGGCACACAATAATCTATCTG GCAAGACTCTTGCGAGAGTTGCACAATTTGCCACGTTTGAAGAGAGCTGCTACAAGGACAACCCTTTTCTTTGTGGAGAACCGCTACTCAAGATTTGCGG TGCGACTATGCCACCGTCACCAACGCCAACTTCAACGAACAATGAAGATGATGGTGGCTTCATCGATATGGAGGTTTTTTATGTGACCTTTGGGGTTGCC TACATCATGGTGCTGCTGGTGATAAGTGCAATTCTTTACATAAATCCATATTGGCGACGAGCTTGGTTTCACTTTATTGAGGTGAGCATCAACAATTGCT ATTATTTTCTGGTGGACAATCTTCCCATTTTATCCAAGTTTTAA
AA sequence Show only first row Show all	>Potri.003G041400.5 pacid=42786539 polypeptide=Potri.003G041400.5.p locus=Potri.003G041400 ID=Potri.003G041400.5.v4.1 annot-version=v4.1 MGVFLQMLTVLLVIMMVSLQGWLPLGCLDEERIALLQLKDSLNYPNGTSLPSWIKADAHCCSWERIECSTGRVTELHLEETRNEELGDWYLNASLLLPFQ ELKALNLRGNRLAGWVEKKGGYELQRLRNLDYLNLRSNSFDNSILSYVEGFPSLKSLYLDYNRLEGLIDLKESLSSLEVLGLSGNNIDKLVASRGPSNLT TLYLHDITTYESSFQLLQSLGAFPSLMTLYLNKNDFRGRILGDELQNLSSLKSLYMDGCSLDEHSLQSLGALPSLKNLLLRALSGSVPSRGFLDLKNLEY LDLNLNTLNNSIFQAIRMMTFLKALNLHGCKLDGRIPLAQGFLNLKNLEHLDLSSNTLDNSIFQTIGLCDLNHLQQLYMYDNDLSGFLPPCLANLTSLQQ LDLSFNHLKIPMSLSPLYNLSKLKYFIGSDNEIYAEEDDHSLSPKFQLESISLSNRGQGAGAFPKFLYHQFSLQSFDLTNIQIKGEFPNWLIENNTHLHD LSLENCSLLGPFLLPKNSHVNLSFLSISMNYFQGQIPLEIGARLPGLEVLFMSSNGFNGSIPFSLGNISSLKGLDLSNNSLQGQIPGWIGNMSSLEFLNL SGNNFSGRLPPRFDTSNLRYVYLSRNKLQGPIAMTFYNSFEMFALDLSHNNLTGSIPKWIDRLSNLRFLLLSYNNLEGEIPIRLCRLDQLTLIDLSHNHF SGNILSWMISSHPFPQQYDSNDYLSSSQQSFEFTTKNVSLSYRGSIIQYFTGIDFSCNNFIGEIPPEIGNLSMIKVLNLSHNSLTGPIPPTFSNLKEIES LDLSYNKLDGEIPPQLIELFFLEFFSVAHNNLSGKTLARVAQFATFEESCYKDNPFLCGEPLLKICGATMPPSPTPTSTNNEDDGGFIDMEVFYVTFGVA YIMVLLVISAILYINPYWRRAWFHFIEVSINNCYYFLVDNLPILSKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.003G041400 [exp]	0	1
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.003G041700 [exp]	1.00	0.9860
AT1G74170		AtRLP13	receptor like protein 13 (.1)		Potri.003G041600 [exp]	2.44	0.9796
AT5G56980			unknown protein		Potri.006G152200 [exp]	7.34	0.9347
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.001G063700 [exp]	8.66	0.9394
AT1G01490			Heavy metal transport/detoxifi...		Potri.017G147500 [exp]	9.59	0.9415
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.018G019700 [exp]	11.22	0.9009
AT4G13440			Calcium-binding EF-hand family...		Potri.019G026820 [exp]	11.61	0.9506
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G123700 [exp]	12.72	0.9503
AT5G07610			F-box family protein (.1)		Potri.001G181000 [exp]	12.80	0.9022
					Potri.001G004900 [exp]	13.49	0.9501

Compare expression of checked genes

Potri.003G041400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.