Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34400 252 / 1e-79 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G33760 177 / 2e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G59720 167 / 2e-47 CRR28 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G36730 162 / 1e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G05240 161 / 1e-45 MEF19 mitochondrial editing factor 19 (.1) AT3G22690 157 / 1e-43 unknown protein AT1G08070 156 / 3e-43 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G42920 152 / 1e-42 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G16860 152 / 7e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G33680 151 / 2e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G108000 [exp] 434 / 3e-150 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.003G041650 [exp] 392 / 2e-139 AT2G34400 226 / 6e-70 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.018G145514 [exp] 333 / 9e-113 AT2G34400 472 / 4e-162 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.018G145510 [exp] 314 / 1e-105 AT2G34400 462 / 3e-158 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.018G147873 [exp] 232 / 4e-78 AT2G34400 168 / 5e-50 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G064301 [exp] 231 / 1e-77 AT2G34400 170 / 7e-51 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.018G144401 [exp] 226 / 1e-75 AT2G34400 164 / 9e-49 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.011G052300 [exp] 185 / 1e-54 AT2G33760 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G043400 [exp] 178 / 4e-52 AT2G33760 775 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010320 [exp] 294 / 3e-96 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10018492 [exp] 179 / 2e-52 AT4G18750 385 / 2e-123 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10025490 [exp] 174 / 3e-50 AT2G33760 734 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002024 [exp] 166 / 4e-48 AT5G56310 344 / 6e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039703 [exp] 166 / 3e-47 AT4G18750 394 / 6e-127 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040171 [exp] 159 / 2e-46 AT2G36730 456 / 4e-159 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039355 [exp] 164 / 9e-46 AT3G22690 627 / 0.0 unknown protein Lus10006600 [exp] 154 / 7e-45 AT3G22690 384 / 3e-127 unknown protein Lus10027389 [exp] 156 / 2e-44 AT5G66520 393 / 7e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031028 [exp] 158 / 3e-44 AT4G19191 727 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.003G041501.2 pacid=42785215 polypeptide=Potri.003G041501.2.p locus=Potri.003G041501 ID=Potri.003G041501.2.v4.1 annot-version=v4.1 ATGCATCCCTTGTTTTTAATCAAATCACCAAACCATGCCTTCAATGTCATGCTTCGTGGGTTAGCTACCACACGGAAAAAGTATGATTTTTGTGCTGAAT TGTATTACAAACTGAAGTCTTTAGGCCTAAAAGCAAATAATTTTACATACCCTTTTTTGTTTATAGCGTGTGGGAATGTTTGGGGTTTTCTTCATGGAAA GATCGATCATCGTCTGGTGTTTAAGGCTGGTTTGGAAGGTGATGAGTATGTGAATCGTTCTTTGATTACAATGTACAAAAGGTGTGGTGAAATGGGGTTT GCACGAATGGTGTTTGATGAAATGGGTGAGAGAGAGTTGGCGTCATGGAATTCGATGATCTCGGGGTATTCTAAGACAAGTTTTGCTAAAAAGGCATTTG GGTTGTTTATGGAAATGAGGGAGAAGGGGTTTGAACCAGATGAGATGACGTTGGTGAGTGTTCTCGGGGCGTGTGGGGATTTGGGTTTGGGGAGATGGGT GGAGGGGTTTGTTTTGGAGAAGAAGGTGGAGGTAAATTCATATGTGGGGTCTGCTTTGATTGACATGTATGGTAAGTGTAGGGATTTGATATCTGCGAGG AGGGTCTTTGATTCAATGCCAAACAAGGATGTTGTCACTTGGAATGCCATTATCACAGGGTGCTCACAGAATGGAGCTTCCAATGAAGTAATTGTACTAT TCAATGGAATGAAAAAGACAGGTCCTAATCCAGATAAAGTCACAATGATTGAAGTATATATTGTCTGCATGTTCCACAATAGGGGCCTTTGA
AA sequence Show only first row Show all	>Potri.003G041501.2 pacid=42785215 polypeptide=Potri.003G041501.2.p locus=Potri.003G041501 ID=Potri.003G041501.2.v4.1 annot-version=v4.1 MHPLFLIKSPNHAFNVMLRGLATTRKKYDFCAELYYKLKSLGLKANNFTYPFLFIACGNVWGFLHGKIDHRLVFKAGLEGDEYVNRSLITMYKRCGEMGF ARMVFDEMGERELASWNSMISGYSKTSFAKKAFGLFMEMREKGFEPDEMTLVSVLGACGDLGLGRWVEGFVLEKKVEVNSYVGSALIDMYGKCRDLISAR RVFDSMPNKDVVTWNAIITGCSQNGASNEVIVLFNGMKKTGPNPDKVTMIEVYIVCMFHNRGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34400			Pentatricopeptide repeat (PPR-...		Potri.003G041501 [exp]	0	1
AT2G34400			Pentatricopeptide repeat (PPR-...		Potri.003G041650 [exp]	1.73	0.6816
AT1G09640			Translation elongation factor ...		Potri.013G103100 [exp]	17.37	0.6322
AT3G26750			unknown protein		Potri.007G019800 [exp]	23.66	0.5521
AT4G39880			Ribosomal protein L23/L15e fam...		Potri.007G093100 [exp]	31.46	0.5942
AT1G09740			Adenine nucleotide alpha hydro...		Potri.002G104700 [exp]	32.03	0.5412
AT1G79940		ATERDJ2A	DnaJ / Sec63 Brl domains-conta...		Potri.004G072200 [exp]	32.71	0.6088
AT4G18905			Transducin/WD40 repeat-like su...		Potri.007G019601 [exp]	44.00	0.5831
AT3G11460			Pentatricopeptide repeat (PPR)...		Potri.006G211400 [exp]	44.58	0.5844
AT3G15200			Tetratricopeptide repeat (TPR)...		Potri.011G115500 [exp]	66.85	0.5390
AT4G01320		ATSTE24	Peptidase family M48 family pr...		Potri.002G162700 [exp]	72.56	0.5561	ATSTE24.2

Compare expression of checked genes

Potri.003G041501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.