Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13898 79 / 5e-20 unknown protein AT5G10310 62 / 6e-13 unknown protein AT4G37810 56 / 8e-11 unknown protein AT2G30370 54 / 2e-09 EPFL6, CHAL EPF1-like 6, CHALLAH, allergen-related (.1.2) AT3G22820 48 / 7e-08 EPFL5, CLL1 epidermal patterning factor like 5, CHALLAH-LIKE 1, allergen-related (.1) AT4G14723 48 / 7e-08 EPFL4, CLL2 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein AT1G80133 38 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G095400 [exp] 64 / 8e-14 AT5G10310 105 / 2e-30 unknown protein Potri.005G073700 [exp] 61 / 1e-12 AT5G10310 102 / 7e-29 unknown protein Potri.002G112900 [exp] 57 / 8e-11 AT4G37810 90 / 9e-24 unknown protein Potri.013G155500 [exp] 53 / 2e-09 AT2G30370 93 / 7e-25 EPF1-like 6, CHALLAH, allergen-related (.1.2) Potri.008G157300 [exp] 49 / 3e-08 AT4G14723 69 / 4e-16 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein Potri.019G128200 [exp] 47 / 3e-07 AT2G30370 110 / 7e-32 EPF1-like 6, CHALLAH, allergen-related (.1.2) Potri.018G130700 [exp] 43 / 5e-06 AT1G80133 62 / 1e-13 unknown protein Potri.010G082200 [exp] 40 / 8e-05 AT4G14723 71 / 1e-16 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008387 [exp] 115 / 1e-33 AT3G13898 76 / 9e-19 unknown protein Lus10006016 [exp] 104 / 8e-28 AT3G13898 76 / 4e-17 unknown protein Lus10025740 [exp] 59 / 4e-12 AT5G10310 100 / 2e-28 unknown protein Lus10035922 [exp] 59 / 5e-12 AT5G10310 100 / 2e-28 unknown protein Lus10011591 [exp] 56 / 1e-10 AT4G37810 102 / 6e-29 unknown protein Lus10021901 [exp] 53 / 1e-09 AT4G14723 104 / 2e-30 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein Lus10041186 [exp] 50 / 1e-08 AT4G14723 106 / 5e-31 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein Lus10007240 [exp] 51 / 3e-08 AT4G37810 75 / 2e-17 unknown protein Lus10006616 [exp] 48 / 3e-08 AT4G14723 99 / 5e-29 epidermal patterning factor like 4, CHALLAH-LIKE 2, unknown protein Lus10024189 [exp] 48 / 9e-08 ND 107 / 4e-31
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G042300.2 pacid=42786119 polypeptide=Potri.003G042300.2.p locus=Potri.003G042300 ID=Potri.003G042300.2.v4.1 annot-version=v4.1 ATGGAGGCAAGTTCTATTTGCTGTTTAGTGCTAGCACTGCAGATAGTGAGTTTGGTTTCTGCAGCAAGTAGGCCTTTTGCACCTAATAGCGGTGTTGCTG TCAACCGAGCAGTCACAGGACACAGCCTTCAATCTTTACAAGTTCCACTGGACTCGAACTTTGACCCCCAATCAGGTTCCGAAAAAGGCATTAAAACCAA AGATGGGGTGGCGGGTGGGATGATAATCGAGGCAGCAGCAGGTTATGCTAAAGGCATTACCAAAATTGGGTCCACCCCACCAAGTTGTGAGCACAAGTGC CATGGCTGCACTCCTTGTGAAGCAATTCAAGTGCCAGCCATCAGCAAAACCGGCACCCACCATTTAAGTGTAAACTATGCAAATTATGAGCCTGAAGGTT GGAAATGCAAATGTGGACCTTCCTTCTATAGCCCTTGA
AA sequence Show only first row Show all	>Potri.003G042300.2 pacid=42786119 polypeptide=Potri.003G042300.2.p locus=Potri.003G042300 ID=Potri.003G042300.2.v4.1 annot-version=v4.1 MEASSICCLVLALQIVSLVSAASRPFAPNSGVAVNRAVTGHSLQSLQVPLDSNFDPQSGSEKGIKTKDGVAGGMIIEAAAGYAKGITKIGSTPPSCEHKC HGCTPCEAIQVPAISKTGTHHLSVNYANYEPEGWKCKCGPSFYSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13898			unknown protein		Potri.003G042300 [exp]	0	1
AT4G04210		PUX4	plant UBX domain containing pr...		Potri.011G005000 [exp]	11.61	0.7898
AT4G17660			Protein kinase superfamily pro...		Potri.002G251300 [exp]	16.18	0.6945
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Potri.001G012500 [exp]	21.77	0.8063
AT3G10940		LSF2	LIKE SEX4 2, dual specificity ...		Potri.019G048600 [exp]	22.44	0.7308
AT3G27440		UKL5	uridine kinase-like 5 (.1)		Potri.017G071200 [exp]	33.76	0.7896
AT1G05620		NSH2, URH2	nucleoside hydrolase 2, uridin...		Potri.007G144600 [exp]	55.74	0.7519
AT2G33255			Haloacid dehalogenase-like hyd...		Potri.010G063700 [exp]	83.35	0.6806
AT5G11160		APT5	adenine phosphoribosyltransfer...		Potri.018G026200 [exp]	85.79	0.7320	Pt-APT2.1
AT3G05910			Pectinacetylesterase family pr...		Potri.005G001500 [exp]	110.32	0.7148
AT3G14880			unknown protein		Potri.007G098800 [exp]	146.28	0.7047

Compare expression of checked genes

Potri.003G042300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.