Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72670 221 / 1e-67 IQD8 IQ-domain 8 (.1) AT2G26180 200 / 2e-59 IQD6 IQ-domain 6 (.1) AT1G17480 141 / 6e-38 IQD7 IQ-domain 7 (.1) AT3G22190 103 / 5e-24 IQD5 IQ-domain 5 (.1.2) AT5G03040 74 / 6e-14 IQD2 IQ-domain 2 (.1.2.3) AT3G09710 72 / 1e-13 IQD1 IQ-domain 1 (.1.2) AT4G00820 72 / 2e-13 IQD17 IQ-domain 17 (.1) AT3G52290 64 / 1e-10 IQD3 IQ-domain 3 (.1) AT3G15050 62 / 1e-10 IQD10 IQ-domain 10 (.1) AT1G01110 63 / 2e-10 IQD18 IQ-domain 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G226600 [exp] 279 / 2e-89 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.001G197101 [exp] 184 / 7e-56 AT1G72670 83 / 2e-18 IQ-domain 8 (.1) Potri.018G062001 [exp] 165 / 5e-48 AT2G26180 260 / 2e-85 IQ-domain 6 (.1) Potri.001G215200 [exp] 123 / 1e-30 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.009G015800 [exp] 108 / 1e-25 AT3G22190 286 / 9e-93 IQ-domain 5 (.1.2) Potri.006G131100 [exp] 88 / 2e-18 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.010G218100 [exp] 86 / 6e-18 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.016G086300 [exp] 84 / 3e-17 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.001G375700 [exp] 76 / 4e-15 AT3G15050 245 / 1e-80 IQ-domain 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013522 [exp] 208 / 5e-62 AT2G26180 403 / 2e-138 IQ-domain 6 (.1) Lus10014870 [exp] 136 / 3e-34 AT2G26180 249 / 5e-74 IQ-domain 6 (.1) Lus10013362 [exp] 112 / 4e-27 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10004107 [exp] 104 / 6e-24 AT3G22190 308 / 6e-101 IQ-domain 5 (.1.2) Lus10019916 [exp] 78 / 3e-15 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10036508 [exp] 77 / 9e-15 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10041419 [exp] 76 / 1e-14 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10026486 [exp] 76 / 2e-14 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3) Lus10025425 [exp] 59 / 2e-09 AT2G33990 243 / 1e-79 IQ-domain 9 (.1) Lus10015300 [exp] 56 / 2e-08 AT2G33990 242 / 3e-79 IQ-domain 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Potri.003G042700.1 pacid=42786013 polypeptide=Potri.003G042700.1.p locus=Potri.003G042700 ID=Potri.003G042700.1.v4.1 annot-version=v4.1 ATGGGTGCTTCAGGGAATTGGCTCAAATCACTAATCACTCTAAAAAATCCCCTAACAACGACAGACCAGAGGGATAACAAGGGAAACAAGAAGAAATGGA GGCTATGGAGGAGCCCGTCAGAAGGGTATATACAAACGTCAATCAAGGGCTCGAAAAGGGTCCATGTGGCTTCGTCAGAATCGTCTGATTCTTCCCTTGT AGCCGATGATGCGTTCACTGCTGCCATGGCTACTGTTGCCAGAGCTCCACCTAGAGATTTCATGATGGTTAAGCAAGAATGGGCCGCTATTCGGATCCAA ACTGCTTTTCGAGGCTTATTGGCAAGAAGGGCTACGAGGGCTTTGAAAGCAGTAGTGAGGCTTCAAGCTATATTTCGTGGTCGGAAAGTCCGAAAGCAAG CTGCTGTGACACTGAGGTGTATGCAAGCTCTTGTTCGGGTTCAGGCTCGAGTAAGGGCTCAAACTGTGAGCATGGCTGAAGCTCAAGCTACACAGAACGT GTTGAATGAGTGCATGTGCCAAGCTGATCCCATCAAGCAGGCGGAGAAACGATGGTGTGATAGTCCAGGAACAGTGGATAAGGTCAAGAAAAAGTTACAA ATGAGAACAGAAGGAGCCATTAAGAGGGAGAGAGCAATTGCATACTCCCTCTCTCAACAGAAATCAAGATCTAATTGTGCAAGCCCATGTAGAAGAACAA GCAAGTCAGCATTGTCTCTCAAGAATCAGTCATTGAATAACAGCAGCCCTGGATGGAGCTGGCTGGAACGTTGGATGGCAACCAAGCCATGGGAAGATAG ACTGGTGGAGGAATTTCATACCAAATCATCAGAGATTCCGTTTTCCAGGAAAAGCGAAGATAATATTGCCAGCTTCTATTTCTCTAAACACGACTCAGAA AAAGTGAGAAGAAACAATGTTGCAACCGGAATTCTTGCTAAACCTCCTATTGTCAATCATGTTACTCGCTCCTCTTCAACACCAAGCTCTGAATCCCTAT ACAACGAGAGCTCGTTATCAACTGCATCTACATCTCCCTCACCAATACCAATTTTGAACGACATGTTAGTGGAAGAAGGGAGTTATAACCAAAAACCTGC TTACATGAATCTAACCGAGTCAACTAAGCTTAAGCAAAAAAACAGCAGGCATTCTTCTCAAAACATCCAGAGGCAGATGATGGACGATAAGTTTCTTATG AAGTCAATGGAACTTTTGGATGAAGACTCTAAGAGCAGTGCTGATTCCAACCCTTCATTTCATTTGTCAAGGGATCTTTACCCACCATTGCCTTTGGGTA GACATGATGAGATAAGAAATCGACGATTCTAA
AA sequence Show only first row Show all	>Potri.003G042700.1 pacid=42786013 polypeptide=Potri.003G042700.1.p locus=Potri.003G042700 ID=Potri.003G042700.1.v4.1 annot-version=v4.1 MGASGNWLKSLITLKNPLTTTDQRDNKGNKKKWRLWRSPSEGYIQTSIKGSKRVHVASSESSDSSLVADDAFTAAMATVARAPPRDFMMVKQEWAAIRIQ TAFRGLLARRATRALKAVVRLQAIFRGRKVRKQAAVTLRCMQALVRVQARVRAQTVSMAEAQATQNVLNECMCQADPIKQAEKRWCDSPGTVDKVKKKLQ MRTEGAIKRERAIAYSLSQQKSRSNCASPCRRTSKSALSLKNQSLNNSSPGWSWLERWMATKPWEDRLVEEFHTKSSEIPFSRKSEDNIASFYFSKHDSE KVRRNNVATGILAKPPIVNHVTRSSSTPSSESLYNESSLSTASTSPSPIPILNDMLVEEGSYNQKPAYMNLTESTKLKQKNSRHSSQNIQRQMMDDKFLM KSMELLDEDSKSSADSNPSFHLSRDLYPPLPLGRHDEIRNRRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72670		IQD8	IQ-domain 8 (.1)		Potri.003G042700 [exp]	0	1
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Potri.005G258300 [exp]	1.73	0.9765
AT3G05330		ATN ,ATTAN	A. THALIANA TAN1, TANGLED, cyc...		Potri.005G033200 [exp]	2.00	0.9800
AT3G06030		AtANP3, MAPKKK1...	NPK1-related protein kinase 3 ...		Potri.010G092000 [exp]	3.46	0.9706	Pt-ANP3.2
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Potri.015G044600 [exp]	4.00	0.9774	HIK.3
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Potri.014G155900 [exp]	4.47	0.9695
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Potri.002G080000 [exp]	5.00	0.9725
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Potri.009G165800 [exp]	5.29	0.9670
AT2G16270			unknown protein		Potri.009G084400 [exp]	6.00	0.9734
AT1G23790			Plant protein of unknown funct...		Potri.010G038600 [exp]	6.00	0.9698
AT1G02730		SOS6, ATCSLD5	SALT OVERLY SENSITIVE 6, CELLU...		Potri.014G125100 [exp]	6.32	0.9637	ATCSLD5.1

Compare expression of checked genes

Potri.003G042700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.