Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ALA5.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17500 1890 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G72700 1882 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G13900 1840 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G54280 1839 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G68710 1354 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G13210 1348 / 0 ACA.L autoinhibited Ca2+/ATPase II, autoinhibited Ca2+/ATPase II (.1) AT3G25610 1342 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G26130 1328 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1.2) AT3G27870 1323 / 0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT1G59820 963 / 0 ALA3 aminophospholipid ATPase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G197500 [exp] 2257 / 0 AT1G17500 1902 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G081200 [exp] 1463 / 0 AT1G17500 1461 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.012G058000 [exp] 1370 / 0 AT1G68710 1764 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.008G111200 [exp] 1354 / 0 AT1G68710 1767 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G132700 [exp] 1332 / 0 AT1G68710 1753 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.001G349100 [exp] 1267 / 0 AT3G27870 1687 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.010G039900 [exp] 945 / 0 AT1G59820 1964 / 0.0 aminophospholipid ATPase 3 (.1) Potri.008G191400 [exp] 932 / 0 AT1G59820 1950 / 0.0 aminophospholipid ATPase 3 (.1) Potri.006G109200 [exp] 694 / 0 AT5G04930 1321 / 0.0 aminophospholipid ATPase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006881 [exp] 2058 / 0 AT1G17500 1907 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008473 [exp] 2043 / 0 AT1G17500 1914 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10037622 [exp] 2037 / 0 AT1G17500 1895 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10006017 [exp] 1966 / 0 AT1G17500 1851 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10019152 [exp] 1348 / 0 AT3G25610 1871 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10022238 [exp] 1322 / 0 AT3G27870 1837 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035069 [exp] 1319 / 0 AT3G25610 1783 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10035068 [exp] 1244 / 0 AT1G68710 1677 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10008776 [exp] 1129 / 0 AT3G27870 1540 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Lus10013286 [exp] 955 / 0 AT1G59820 2015 / 0.0 aminophospholipid ATPase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase CL0137 [poplar] [flax] HAD PF12710 [poplar] [flax] HAD haloacid dehalogenase-like hydrolase CL0137 [poplar] [flax] PF16209 [poplar] [flax] PhoLip_ATPase_N Phospholipid-translocating ATPase N-terminal CL0137 [poplar] [flax] PF16212 [poplar] [flax] PhoLip_ATPase_C Phospholipid-translocating P-type ATPase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.003G043300.5 pacid=42785823 polypeptide=Potri.003G043300.5.p locus=Potri.003G043300 ID=Potri.003G043300.5.v4.1 annot-version=v4.1 ATGACACGGGGAAGGATAAGAGCAAGGCTCCGGCGGAGCCATCTCCACCCGTTCTCTTGCTTAAGGCCAAATGCCAACAACAGTGAGGGGCCGCATCCTT TACTAGGGCCTGGGTTCTCCAGAATTGTTCATTGCAACCAACCCCATAAGCACCAGAAAAAACCCTTGAAATACTGCTCAAATTATATATCTACCACGAA GTACAATATAGTTACATTCTTGCCCAAGGCACTGTATGAACAGTTCCATCGGCTTGCTAATCTCTATTTCCTAGTTGCTGCAGTTCTTTCACTTACAGCT GTTGCCCCATTCTCGCCTCTGAGCATGATTTTACCGTTGGCTTTTGTTGTTGGCCTTAGTATGGCAAAAGAAGCTCTAGAAGATTGGCGCAGGTTTACGC AGGATATGAAGGTTAATAGTCGGAAAGCTAGTGTTCATAAAGGTGGGGGTGTTTTTGGTTATAAGCCATGGCAGAAGATTCAGGTTGGTGATGTGGTGAA AGTGGAAAAAGACCAGTTTTTCCCTGCTGATTTGCTTCTGTTGTCAACAAGTTACGATGATGGGATTTGCTATGTGGAGACTATGAACTTAGATGGTGAG ACTAACTTGAAGGTTAAGAGATCATTGGAGGTAACCTTGCCTTTGGAGGATGATGAGTCTTTCAAGAACTTTACAGGAATAATAAAGTGCGAAGATCCAA ACCCCAATCTTTACACCTTTGTTGGTAATTTTGAGTATGAACGTCAGGTTTATCCTCTTGACCCTACTCAGATTCTTCTTAGAGATTCAAAGCTCAGAAA TACATCTTATGTATATGGAGTTGTGATATTCACTGGTTTTGATAGCAAAGTCATGCAGAACTCAACAAAGTCTCCTTCAAAAAGGAGCAAAATAGAGAAA AAAATGGACAAAATTATATACATCCTTCTCAGCCTTCTTGTACTGATTTCATCCATTAGTTCAATTGGCTTTGCTGTGAAGATAAAGTTTCAAATGCCAG ACTGGACGTACATGCAACCCCGGAATGAAAATGATTTGTATGACCCTGACAATCCTGGCAAGTCTGGGGTAGCACATTTGATCACTGCTCTCATCCTTTA TGGGTATTTAATACCCATTTCTCTCTATGTCTCAATTGAGATTGTGAAGGTGTTTCAAGCAAGGTTCATTAACCAAGACATACATATGTATGATGAAGAA ACTGGCAATACTGCTCAAGCACGAACATCAAACTTAAATGAGGAGTTGGGTCAGGTCGACACTATCCTCTCTGATAAAACTGGCACCTTGACCTGTAATC AGATGGATTTTCTGAAGTGCTCCATTGCTGGTACTGCATATGGTGTATGTTCTAGTGAAATTGAGGTTGCTGCAGCAAAACAGATGGCTATGGATCTTGA GGAGCAGGATACACAAAATACTAATGTTTCGAGGTATGGAAAAAGTGCACATAAGGAGGATAGCAGAGGAGGTCCAGAAATTGAACTCGAGAGTGTCATC ACTTCTAAATGTGATAATGATCAGAAGCCAGCAATAAAGGGATTTAATTTTGAGGATAGCCGGCTCATGGATGGAAAGTGGTTGAATGAACGAAATCGAG AGGTCCTTTTGCTATTTTTCAGGATACTAGCAATATGTCAGACTGCCGTTCCTGAGCTGAATGAAGAGACTGGTATGTTTACATATGAAGCAGAGTCACC TGACGAAGCAGCCTTTCTTGCTGCAGCAAGAGAATTTGGTTTTGAATTTTACAAAAGAACTCAATCAAGCGTGTTTATTCGTGAAAAATATGCACACCCA GGACGATTGATTGAAAGAGAGTTCAAAATTCTCAATTTATTGGAATTTACAAGCAAAAGGAAGCGAATGTCTGTAATTGTGCGGGATGAGGATGGTCAAA TTTTACTCCTGTGCAAAGGTGCTGATAGTGTAATATTTGATCGACTATCAAAGAATGGAAGAATATATGAGGAAACTACTGTTAAGCATTTGAATGAATA TGGAGAAGCTGGGTTGCGTACACTGGCACTTGCTTATAAAAAGCTTGATGAGTCCGAGTATTCTGCGTGGAACAATGAGTTTGTCAAAGTCAAAACTTCT ATTAGCACTGATAGAGAAGCAATGCTTGAGCGAGTTGCAGATATGATGGAAAAGGATCTGATTCTTGTTGGTGCTACTGCCGTGGAGGACAAATTGCAAA AAGGGGTGCCCCAGTGCATAGACAAACTTGCACAAGCTGGTCTCAAGATTTGGGTTTTGACAGGGGATAAGATGGAAACTGCAATCAACATAGGATTTTC ATGTAGTTTACTCCGCCAGGGCATGAAGCGGATCTGTATAACTGTAATGAACTCAGATGTGGTAGCTCAAGACTCAAAGCAGGCTGTGAAAGAGAATATT TTGATGCAAATCACCAATTCCTCTCAAATGGTCAAGCTGCAAAAGGATCCACATGCTGCATTTGCGTTAATTATTGATGGAAAATCTTTATCCTATGCTC TAGAGGATGATATGAAGCATCATTTCTTAGCGTTGGCTGTTGGCTGTGCATCTGTCATATGCTGTCGTGTCTCTCCCAAGCAGAAGGCACTGGTAACAAG ATTAGTAAAGGAAGGAACTAAAAAAACCACATTAGCGATAGGTGATGGTGCAAATGATGTTGGGATGATTCAAGAAGCTGACATTGGAGTTGGCATCAGT GGGGTGGAAGGTATGCAGGCTGTGATGGCGAGTGATTTTTCTATTTCCCAGTTTCGGTTTCTTGAAAGACTTTTGGTAGTCCATGGACACTGGTGCTACA AGAGAATTGCACAGATGATTTGCTATTTCTTCTACAAAAATATAGCATTCGGCCTTACGCTTTTCTACTTTGAGGCATTCACGGCCTTTTCTGGGCAGTC AGTTTACAATGACTGGTACATGCTATTGTTCAATGTCATTCTTACCTCATTGCCTGTCATTTCACTCGGAGTTTTTGAACAAGATGTGTCTTCTGAGGTC TGCTTGCAGTTCCCAGCATTGTATCAGCAAGGGACCAAAAACTTGTTTTTTGATTGGTATCGAATACTTGGGTGGATGGGTAATGGTTTGTATTCCTCTC TTGTCATTTTCATCCTAAATATCGTGATCTTTTATAACCAAGCATTCCGTGCTGGAGGCCAAACTGCTGATATGGCTGCTGTGGGTGCTACAATGTTCTC CTGCATCATCTGTGCTGTGAACTGCCAGATTGCGCTCACGATGAGCCACTTTACATGGATACAACATCTCTTTGTCTGGGGAAGCGTTGCCACTTGGTAC TTGTTTCTGTTACTTTACGGTCTGATGCCTCCATCTTATTCGGGGGACGTCTACAGACTTTTAGTTGAAGTTCTTGGTCCGGCACCCATCTACTGGAGTA CCATCCTCTTGGTAACAGTCGCATGTATTGTGCCTTACCTGGTTCACATATCATTCCAAAGATGTTTCAATCCAATGGATCATCATATCATCCAAGAAAT CAAGTACTATAAGAAGGATGTTGAGGACCAACACATGTGGAGAAGGGAACGATCCAAGGCAAGACAAGAAACGAAGATTGGGTTCACAGCAAGGGTAGAT GCAAAGATCAGACAATTCAAAGGGAAGCTGAGGAAGAATTCTTCAACGTTGGTTTCGCAAAATTGTATGCCTTCCCCATCTTAA
AA sequence Show only first row Show all	>Potri.003G043300.5 pacid=42785823 polypeptide=Potri.003G043300.5.p locus=Potri.003G043300 ID=Potri.003G043300.5.v4.1 annot-version=v4.1 MTRGRIRARLRRSHLHPFSCLRPNANNSEGPHPLLGPGFSRIVHCNQPHKHQKKPLKYCSNYISTTKYNIVTFLPKALYEQFHRLANLYFLVAAVLSLTA VAPFSPLSMILPLAFVVGLSMAKEALEDWRRFTQDMKVNSRKASVHKGGGVFGYKPWQKIQVGDVVKVEKDQFFPADLLLLSTSYDDGICYVETMNLDGE TNLKVKRSLEVTLPLEDDESFKNFTGIIKCEDPNPNLYTFVGNFEYERQVYPLDPTQILLRDSKLRNTSYVYGVVIFTGFDSKVMQNSTKSPSKRSKIEK KMDKIIYILLSLLVLISSISSIGFAVKIKFQMPDWTYMQPRNENDLYDPDNPGKSGVAHLITALILYGYLIPISLYVSIEIVKVFQARFINQDIHMYDEE TGNTAQARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVCSSEIEVAAAKQMAMDLEEQDTQNTNVSRYGKSAHKEDSRGGPEIELESVI TSKCDNDQKPAIKGFNFEDSRLMDGKWLNERNREVLLLFFRILAICQTAVPELNEETGMFTYEAESPDEAAFLAAAREFGFEFYKRTQSSVFIREKYAHP GRLIEREFKILNLLEFTSKRKRMSVIVRDEDGQILLLCKGADSVIFDRLSKNGRIYEETTVKHLNEYGEAGLRTLALAYKKLDESEYSAWNNEFVKVKTS ISTDREAMLERVADMMEKDLILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFSCSLLRQGMKRICITVMNSDVVAQDSKQAVKENI LMQITNSSQMVKLQKDPHAAFALIIDGKSLSYALEDDMKHHFLALAVGCASVICCRVSPKQKALVTRLVKEGTKKTTLAIGDGANDVGMIQEADIGVGIS GVEGMQAVMASDFSISQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTLFYFEAFTAFSGQSVYNDWYMLLFNVILTSLPVISLGVFEQDVSSEV CLQFPALYQQGTKNLFFDWYRILGWMGNGLYSSLVIFILNIVIFYNQAFRAGGQTADMAAVGATMFSCIICAVNCQIALTMSHFTWIQHLFVWGSVATWY LFLLLYGLMPPSYSGDVYRLLVEVLGPAPIYWSTILLVTVACIVPYLVHISFQRCFNPMDHHIIQEIKYYKKDVEDQHMWRRERSKARQETKIGFTARVD AKIRQFKGKLRKNSSTLVSQNCMPSPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17500			ATPase E1-E2 type family prote...		Potri.003G043300 [exp]	0	1	Pt-ALA5.2
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.004G027900 [exp]	1.41	0.8701
AT1G55040			zinc finger (Ran-binding) fami...		Potri.005G033000 [exp]	2.00	0.8419
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Potri.002G079700 [exp]	2.44	0.8304
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Potri.001G137200 [exp]	3.74	0.7996	CEO1.2
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.001G013800 [exp]	4.00	0.8205
AT3G18960	B3		AP2/B3-like transcriptional fa...		Potri.012G093200 [exp]	4.58	0.8271
AT3G60030	SBP	SPL12	squamosa promoter-binding prot...		Potri.014G114300 [exp]	4.69	0.8098
AT3G18210			2-oxoglutarate (2OG) and Fe(II...		Potri.012G051200 [exp]	5.91	0.8335
					Potri.004G111166 [exp]	8.36	0.8157
					Potri.011G033200 [exp]	8.83	0.7863

Compare expression of checked genes

Potri.003G043300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.