Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72710 640 / 0 CKL2 casein kinase 1-like protein 2 (.1) AT4G26100 616 / 0 CKL1, CK1 casein kinase 1 (.1) AT5G57015 595 / 0 CKL12 casein kinase I-like 12 (.1) AT2G19470 550 / 0 CKL5 casein kinase I-like 5 (.1) AT1G03930 520 / 0 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT5G44100 520 / 0 CKL7 casein kinase I-like 7 (.1) AT3G23340 513 / 0 CKL10 casein kinase I-like 10 (.1) AT4G28540 502 / 5e-176 CKL6, PAPK1 casein kinase I-like 6 (.1) AT4G14340 499 / 3e-175 CKL11, CKI1 CASEIN KINASE I-LIKE 11, casein kinase I (.1) AT5G43320 493 / 3e-172 CKL8 casein kinase I-like 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G197600 [exp] 759 / 0 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G065900 [exp] 670 / 0 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.006G147800 [exp] 660 / 0 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1) Potri.002G036000 [exp] 523 / 0 AT4G28540 650 / 0.0 casein kinase I-like 6 (.1) Potri.005G226900 [exp] 519 / 0 AT4G28540 645 / 0.0 casein kinase I-like 6 (.1) Potri.010G070400 [exp] 518 / 0 AT3G23340 680 / 0.0 casein kinase I-like 10 (.1) Potri.008G168100 [exp] 513 / 1e-180 AT3G23340 656 / 0.0 casein kinase I-like 10 (.1) Potri.013G047200 [exp] 504 / 5e-177 AT4G14340 643 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Potri.018G041000 [exp] 486 / 2e-170 AT4G28880 589 / 0.0 casein kinase I-like 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006879 [exp] 647 / 0 AT1G72710 664 / 0.0 casein kinase 1-like protein 2 (.1) Lus10027628 [exp] 646 / 0 AT4G26100 702 / 0.0 casein kinase 1 (.1) Lus10037621 [exp] 643 / 0 AT1G72710 655 / 0.0 casein kinase 1-like protein 2 (.1) Lus10006018 [exp] 627 / 0 AT1G72710 649 / 0.0 casein kinase 1-like protein 2 (.1) Lus10011940 [exp] 623 / 0 AT4G26100 680 / 0.0 casein kinase 1 (.1) Lus10022029 [exp] 522 / 0 AT3G23340 649 / 0.0 casein kinase I-like 10 (.1) Lus10033913 [exp] 522 / 0 AT4G28540 663 / 0.0 casein kinase I-like 6 (.1) Lus10042570 [exp] 516 / 0 AT3G23340 653 / 0.0 casein kinase I-like 10 (.1) Lus10021175 [exp] 514 / 0 AT4G14340 701 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10014661 [exp] 512 / 3e-180 AT3G23340 637 / 0.0 casein kinase I-like 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.003G043500.1 pacid=42785180 polypeptide=Potri.003G043500.1.p locus=Potri.003G043500 ID=Potri.003G043500.1.v4.1 annot-version=v4.1 ATGGAGCCGCGTGTCGGCAATAAGTTTCGTCTTGGTCGCAAGATCGGTAGCGGATCCTTTGGAGAGATCTATCTAGGTACAAATATTCAAACCAACGAGG AGGTTGCCATTAAGCTTGAAAATGTGAAGACAAGGCATCCTCAATTGCTGTATGAATCCAAGCTGTACAAGATGCTGCAGGGAGGAACGGGGATTCCGAA TGTTAAATGGTTTGGTGTTGAAGGGGACTATAATGTACTTGTGATGGATTTACTGGGACCTAGTCTTGAGGATTTGTTCAACTTCTGCAATAGGAAGCTG TCTTTGAAGACTGTGCTCATGCTTGCTGATCACATGATTAATCGAGTTGAGTTTGTTCATTCCAAATCCTTTCTTCATCGAGACATCAAGCCAGACAACT TCCTCATGGGATTAGGGAGGCGTGCAAATCAGGTCTATGCCATTGACTTTGGGCTGGCAAAGAAGTATAGAGACACTTCAACACATCAACACATTCCTTA CAGAGAGAATAAAAATTTGACTGGAACTGCAAGATATGCTAGCATGAACACTCACCTTGGCATTGAGCAAAGCCGTAGGGATGATTTAGAATCACTTGGA TATGTTCTTATGTATTTCTTGAGGGGAAGTCTTCCATGGCAGGGACTGAAAGCTGGTACAAAGAAGCAAAAATATGAAAAAATTAGTGAAAAGAAGGTGT CAACTTCTATTGAGGTGTTATGTCGGGGTTATCCTACAGAATTTGCATCCTACTTCCATTACTGTCGGTCGCTCCGTTTTGATGATAAACCAGATTATGC ATACCTGAAACGACTCTTCCGTGATCTCTTTATTCGTGAAGGTTTCCAGTTTGACTATGTTTTTGATTGGACAATTTTGAAATATCAGCAATCACAGAGT GCTAATCCTCCAACCCGTGCACTTGGTCCTGGTGCTGGACCAAGCTCTGGCATTCCTCCTGGTGCTAATAATTTTGATAGGCAGTCAGGTGGGGAAGAAG GTAGACCTGGTTGGTCTTCAACTGATCATGCTCGAAGAAGAAACTCTGGACCTATAGTGAATTCTGGAAATCTATCAAAACAAAAAAGCCCTGTTACAAA TGATCTATCCTTATCAAAAGATGCCACTTTGTCCAGCTCAAGATTTTTGCGATCTAGCGTGTCATCGAGGCAACCTGTTATCTCAAGTAGTCGTGGTGCA GCCCTTGTGAATGATTCCGATCCTTCTCATCCCCGCGCAACCGATGCAAACTTTGCAATGCTTCAGAATGGGCAAAGAATTTCACCTGCTTTATTATCTT CAGAGCAGAAGCCCTCGTTCTCTGGTAGAAATACCAACATAAAGACTTTGGAGTCGACTCGAAGGGGCATTGAGAGCTTGCATGTCAAATACTGA
AA sequence Show only first row Show all	>Potri.003G043500.1 pacid=42785180 polypeptide=Potri.003G043500.1.p locus=Potri.003G043500 ID=Potri.003G043500.1.v4.1 annot-version=v4.1 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTRHPQLLYESKLYKMLQGGTGIPNVKWFGVEGDYNVLVMDLLGPSLEDLFNFCNRKL SLKTVLMLADHMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLG YVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIEVLCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQS ANPPTRALGPGAGPSSGIPPGANNFDRQSGGEEGRPGWSSTDHARRRNSGPIVNSGNLSKQKSPVTNDLSLSKDATLSSSRFLRSSVSSRQPVISSSRGA ALVNDSDPSHPRATDANFAMLQNGQRISPALLSSEQKPSFSGRNTNIKTLESTRRGIESLHVKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72710		CKL2	casein kinase 1-like protein 2...		Potri.003G043500 [exp]	0	1
AT1G74780			Nodulin-like / Major Facilitat...		Potri.015G067000 [exp]	4.12	0.7741
AT5G02570			Histone superfamily protein (....		Potri.004G091200 [exp]	5.29	0.7549
AT1G51720			Amino acid dehydrogenase famil...		Potri.001G199600 [exp]	7.54	0.7490
AT4G08540			DNA-directed RNA polymerase II...		Potri.002G090900 [exp]	8.36	0.7410
AT5G61450			P-loop containing nucleoside t...		Potri.003G108000 [exp]	12.64	0.7384
AT2G01680			Ankyrin repeat family protein ...		Potri.010G106800 [exp]	17.49	0.7122
AT3G14830			unknown protein		Potri.011G106600 [exp]	22.18	0.7421
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Potri.005G018700 [exp]	23.62	0.7398	Pt-VP2.1
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Potri.013G028700 [exp]	29.93	0.7023
AT5G53060			RNA-binding KH domain-containi...		Potri.002G112200 [exp]	31.81	0.7382

Compare expression of checked genes

Potri.003G043500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.