Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13920 791 / 0 RH4, TIF4A1, EIF4A1 eukaryotic translation initiation factor 4A1 (.1.2.3.4) AT1G54270 789 / 0 EIF4A-2 eif4a-2 (.1.2) AT1G72730 769 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT3G19760 508 / 2e-180 EIF4A-III eukaryotic initiation factor 4A-III (.1) AT1G51380 459 / 3e-161 DEA(D/H)-box RNA helicase family protein (.1) AT3G61240 282 / 1e-90 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT4G00660 278 / 6e-89 ATRH8 RNAhelicase-like 8 (.1.2) AT2G45810 279 / 8e-89 DEA(D/H)-box RNA helicase family protein (.1) AT5G11170 243 / 4e-76 DEAD/DEAH box RNA helicase family protein (.1.2) AT5G11200 243 / 4e-76 DEAD/DEAH box RNA helicase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G197900 [exp] 831 / 0 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.018G061050 [exp] 817 / 0 AT3G13920 793 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.006G225700 [exp] 806 / 0 AT3G13920 797 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.005G093900 [exp] 504 / 1e-178 AT3G19760 693 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.007G070000 [exp] 503 / 1e-178 AT3G19760 689 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.002G157500 [exp] 283 / 9e-91 AT4G00660 817 / 0.0 RNAhelicase-like 8 (.1.2) Potri.014G081100 [exp] 281 / 3e-90 AT4G00660 822 / 0.0 RNAhelicase-like 8 (.1.2) Potri.018G028600 [exp] 241 / 1e-75 AT5G11170 807 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.006G253100 [exp] 239 / 6e-75 AT5G11170 808 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017153 [exp] 782 / 0 AT3G13920 785 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10037620 [exp] 772 / 0 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10006878 [exp] 771 / 0 AT3G13920 787 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10021583 [exp] 566 / 0 AT3G13920 540 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10017407 [exp] 513 / 0 AT3G19760 728 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10010206 [exp] 503 / 6e-178 AT3G19760 717 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10040975 [exp] 364 / 7e-125 AT3G19760 494 / 1e-176 eukaryotic initiation factor 4A-III (.1) Lus10017804 [exp] 279 / 4e-89 AT4G00660 854 / 0.0 RNAhelicase-like 8 (.1.2) Lus10014783 [exp] 278 / 6e-89 AT4G00660 853 / 0.0 RNAhelicase-like 8 (.1.2) Lus10030377 [exp] 274 / 3e-87 AT4G00660 850 / 0.0 RNAhelicase-like 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.003G043700.1 pacid=42784678 polypeptide=Potri.003G043700.1.p locus=Potri.003G043700 ID=Potri.003G043700.1.v4.1 annot-version=v4.1 ATGGCGGGTTTGGCACCAGAAGGGTCACAATTCGATTCTAAGCAATATGATGCCAAAATGAATGATTTGCTCGCAAATGATGGACAAGATTTCTTCACAT CATATGATGAGGTTTATGACACTTTTGATTCAATGGGACTGCAAGAGAACCTTTTGAGGGGCATCTATGCCTATGGTTTTGAGAAGCCATCTGCAATCCA GCAAAGAGGAATTGTTCCATTCTGCAAGGGCCTTGATGTGATTCAGCAGGCTCAGTCAGGAACTGGGAAAACAGCAACCTTCTGCTCTGGTATTCTCCAG CAACTTGATTATGGTCTAGTGCAATGTCAAGCTTTGGTCCTTGCGCCCACTAGGGAACTTGCACAACAGATTGAAAAGGTTATGCGGGCACTTGGTGATT ATCTTGGCGTCAAAGTTCATGCTTGTGTTGGTGGCACAAGTGTTCGTGAGGACCAACGCATTCTTCAAGCTGGAGTTCATGTTGTTGTTGGCACTCCTGG TCGTGTGTTTGATATGTTAAGAAGGCAGTCACTTCGTCCAGATTACATTAAAATGTTTGTCCTGGATGAGGCTGATGAAATGCTGTCCCGTGGTTTTAAG GATCAGATCTACGATATTTTCCAGTTGCTGCCATCTAAAGTTCAAGTTGGTGTGTTCTCCGCTACTATGCCACCTGAAGCCCTTGAGATCACAAGGAAGT TCATGAACAAGCCTGTGAGGATCTTGGTTAAGCGTGATGAGCTTACCCTTGAAGGTATCAAACAGTTTCATGTCAATGTTGATAAGGAGGAGTGGAAGCT TGAAACTCTATGTGATCTATACGAGACCCTAGCCATCACTCAGAGTGTTATTTTTGTTAACACCCGCCGCAAGGTTGACTGGCTGACAGACAAGATGCGA AGCCGTGACCACACAGTCTCAGCTACTCATGGAGATATGGACCAGAACACTCGTGATATCATTATGCGAGAATTCCGGTCTGGCTCTTCTCGAGTTCTCA TCACAACTGATCTCCTGGCCCGTGGAATTGATGTGCAGCAAGTGTCCCTTGTCATAAATTATGATCTGCCGACTCAACCAGAAAACTACCTTCACCGTAT TGGACGAAGTGGACGTTTTGGAAGAAAGGGTGTCGCCATTAACTTTGTGACAAGGGATGATGACAGAATGCTGTTTGATATCCAGAAGTTCTATAATGTG GTCATCGAGGAGCTTCCATCTAACGTGGCTGATCTCCTGTGA
AA sequence Show only first row Show all	>Potri.003G043700.1 pacid=42784678 polypeptide=Potri.003G043700.1.p locus=Potri.003G043700 ID=Potri.003G043700.1.v4.1 annot-version=v4.1 MAGLAPEGSQFDSKQYDAKMNDLLANDGQDFFTSYDEVYDTFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ QLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFK DQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLFDIQKFYNV VIEELPSNVADLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Potri.003G043700 [exp]	0	1
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Potri.001G197900 [exp]	1.00	0.8587
AT1G65380		AtRLP10, CLV2	clavata 2, Receptor Like Prote...		Potri.013G087200 [exp]	4.89	0.7503	CLV2.1
AT2G39500			unknown protein		Potri.008G051100 [exp]	8.94	0.7354
AT2G45440		DHDPS2	dihydrodipicolinate synthase (...		Potri.002G149500 [exp]	11.22	0.7599	Pt-DHDPS2.1
AT3G05100			S-adenosyl-L-methionine-depend...		Potri.005G046300 [exp]	12.40	0.7513
AT1G67430			Ribosomal protein L22p/L17e fa...		Potri.010G060400 [exp]	12.40	0.8009
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Potri.005G162600 [exp]	17.14	0.7624
AT5G59850			Ribosomal protein S8 family pr...		Potri.010G208700 [exp]	17.32	0.7835	Pt-WRP15.1
AT5G58005			Cytochrome c oxidase, subunit ...		Potri.006G186500 [exp]	19.39	0.6922
AT3G16640		TCTP	translationally controlled tum...		Potri.008G221200 [exp]	19.49	0.7230

Compare expression of checked genes

Potri.003G043700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.