Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13930 771 / 0 Dihydrolipoamide acetyltransferase, long form protein (.1) AT1G54220 761 / 0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT3G52200 325 / 8e-104 LTA3 Dihydrolipoamide acetyltransferase, long form protein (.1.2) AT1G34430 185 / 2e-52 EMB3003 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) AT3G06850 148 / 8e-39 DIN3, LTA1, BCE2 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) AT5G55070 126 / 4e-31 Dihydrolipoamide succinyltransferase (.1) AT4G26910 123 / 7e-31 Dihydrolipoamide succinyltransferase (.1.2.3) AT3G25860 73 / 2e-13 PLE2, LTA2 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G198000 [exp] 955 / 0 AT3G13930 724 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1) Potri.008G027400 [exp] 337 / 2e-108 AT3G52200 754 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Potri.013G114300 [exp] 209 / 4e-61 AT1G34430 549 / 0.0 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.019G084900 [exp] 196 / 3e-56 AT1G34430 473 / 7e-165 embryo defective 3003, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.008G119500 [exp] 186 / 1e-52 AT3G25860 464 / 5e-161 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.010G126600 [exp] 175 / 2e-48 AT3G25860 470 / 2e-163 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Potri.001G357000 [exp] 142 / 1e-36 AT4G26910 624 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Potri.010G011300 [exp] 140 / 9e-36 AT3G06850 566 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2) Potri.014G154700 [exp] 137 / 5e-35 AT4G26910 520 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037617 [exp] 742 / 0 AT1G54220 716 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10006877 [exp] 731 / 0 AT1G54220 704 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10008412 [exp] 330 / 6e-106 AT3G52200 725 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10001967 [exp] 327 / 1e-104 AT3G52200 717 / 0.0 Dihydrolipoamide acetyltransferase, long form protein (.1.2) Lus10041467 [exp] 166 / 1e-45 AT3G25860 595 / 0.0 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Lus10043117 [exp] 157 / 6e-42 AT4G26910 653 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Lus10043116 [exp] 157 / 7e-42 AT4G26910 638 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Lus10034304 [exp] 156 / 9e-42 AT3G25860 592 / 0.0 PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE, 2-oxoacid dehydrogenases acyltransferase family protein (.1) Lus10032632 [exp] 140 / 4e-36 AT4G26910 560 / 0.0 Dihydrolipoamide succinyltransferase (.1.2.3) Lus10037492 [exp] 135 / 4e-34 AT3G06850 565 / 0.0 DARK INDUCIBLE 3, 2-oxoacid dehydrogenases acyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF00198 [poplar] [flax] 2-oxoacid_dh 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CL0105 [poplar] [flax] Hybrid PF00364 [poplar] [flax] Biotin_lipoyl Biotin-requiring enzyme CL0105 [poplar] [flax] PF02817 [poplar] [flax] E3_binding e3 binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G043900.3 pacid=42785157 polypeptide=Potri.003G043900.3.p locus=Potri.003G043900 ID=Potri.003G043900.3.v4.1 annot-version=v4.1 ATGGCGTATGCTTCTCACCTATTTAAGCACTCAAAAAAGTTACGAAATCACCAGCATGCCGATTTGGTGCGTTGGTTATCAAATGATTCTCACCTCTCCG GTGGTAAAAGAAACGATGCTTGGGCAGTTATGGAAAAAAGGAGGTACTCTAGCGCTGCTGCTAATAGCACTTTACTTTTTTTTGTTGATATGAAGGCAAT GTCATTCGGTGCATCTAAGAAAGATGTTTCTAGGACGTTTATGAAAGTGGGAAGCCCTATTGCTGGACCACTATTTATGAAGGATTTTGCTTGTTCACAG GTACACTGGAAGAGAGGGTTTTCATCTGATTCAGGTCTTCCTCCACACCAAGAGATTGGAATGCCTTCTCTCTCACCCACAATGACAGAGGGTAATATAG CAAGGTGGTTGAAGAAGGAGGGTGACAAGATTTCTACCGGTGAAGTACTCTGTGAAGTCGAAACAGATAAAGCAACTGTTGAGATGGAATGTATGGAAGA AGGTTATCTTGCAAAGATATTGAAGGGAGATGGAGCAAAAGAAATTAAACTTGGCGAGGTAATTGCCATTACCGTTGAAGATGAGGAAGACATTGCAAAA TTTAAGGATTACAATCCTTCAGCATCAGGAAGTGGTGCTACTTCTGCTAACGAGGCTTCTGCCCCTACCCCACCTGCTTCACACAAGGAGGAAGTTGAAA AACCAGCTAGTTTACCAGAACCAAAAATTTCCAAGCCCAGTGCAGCTCCTGATGGAGATCGCACTTTTGCCAGTCCTCTTGCAAGAAAATTGGCTGAAGA TCATAATGTACCCCTCTCAAGTATCAAAGGAACGGGTCCTGATGGCAATATTGTGAAGGCTGATATCGAAGATTACTTGGCTTCACGAGGAAAGGAAGCT CCAGCAACAAAGCCTGTCGCCAAGGACACCTCAGCTCCTGCTTTAGATTATGTGGATATCCCTCATTCTCAAATAAGGAAGGTGACAGCTTCACGCTTGT TGTTATCAAAGCAAACTATTCCCCATTATTATTTAACAGTGGATACATGTGTCGACAAACTTATGGGTTTGCGGAGTCAACTCAATTTGATACAAGAGAC TTCAGGTGGGAAGAGAATATCTGTAAATGATCTTGTAATCAAGGCTGCTGCTTTGGCTCTGAGGAAAGTTCCCCAGTGCAATAGTTCATGGACTGATAGC TATATTCGCCAGTATAATAATGTTAATATCAATGTAGCAGTACAGACAGATAATGGACTATATGTCCCAGTTATTAGGGATGCAGACAAGAAAGGTCTAT CCAAAATTGCTGACGAGGTGAAGAATTTGGCCCAAAAAGCAAAAGAGAATAGCTTGAAACCAGAAGATTATGAGGGAGGCACATTTACTGTTTCCAACTT GGGAGGGCCCTTTGGCATCAAGCAATTTTGTGCGATCATTAATCCTCCTCAATCAGGCATTCTAGCAATTGGGTCTGCTGAGAAGAGGGTCATCCCTGGT TCTGGTCCTGATGATTTCAAATTCGCTTCCTTCATGTCTGTAACTCTAAGCTGTGATCATCGTGTTATAGATGGTGCAATTGGTGCCGAATGGCTAAAAG CATTCAAAGGCTACATTGAGAATCCAGAGTCAATGTTGCTGTAG
AA sequence Show only first row Show all	>Potri.003G043900.3 pacid=42785157 polypeptide=Potri.003G043900.3.p locus=Potri.003G043900 ID=Potri.003G043900.3.v4.1 annot-version=v4.1 MAYASHLFKHSKKLRNHQHADLVRWLSNDSHLSGGKRNDAWAVMEKRRYSSAAANSTLLFFVDMKAMSFGASKKDVSRTFMKVGSPIAGPLFMKDFACSQ VHWKRGFSSDSGLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKISTGEVLCEVETDKATVEMECMEEGYLAKILKGDGAKEIKLGEVIAITVEDEEDIAK FKDYNPSASGSGATSANEASAPTPPASHKEEVEKPASLPEPKISKPSAAPDGDRTFASPLARKLAEDHNVPLSSIKGTGPDGNIVKADIEDYLASRGKEA PATKPVAKDTSAPALDYVDIPHSQIRKVTASRLLLSKQTIPHYYLTVDTCVDKLMGLRSQLNLIQETSGGKRISVNDLVIKAAALALRKVPQCNSSWTDS YIRQYNNVNINVAVQTDNGLYVPVIRDADKKGLSKIADEVKNLAQKAKENSLKPEDYEGGTFTVSNLGGPFGIKQFCAIINPPQSGILAIGSAEKRVIPG SGPDDFKFASFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13930			Dihydrolipoamide acetyltransfe...		Potri.003G043900 [exp]	0	1
AT5G55070			Dihydrolipoamide succinyltrans...		Potri.011G089200 [exp]	3.00	0.8971
AT2G47510		FUM1	fumarase 1 (.1.2)		Potri.002G201300 [exp]	4.47	0.8950	FUM1.1
AT5G13430			Ubiquinol-cytochrome C reducta...		Potri.003G162200 [exp]	5.29	0.9059
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.005G146800 [exp]	6.32	0.8979
AT4G39390		NST-K1, ATNST-K...	A. THALIANA NUCLEOTIDE SUGAR T...		Potri.007G077900 [exp]	16.24	0.8025
AT5G13450		ATP5	delta subunit of Mt ATP syntha...		Potri.009G061600 [exp]	16.94	0.8839
AT5G03345			unknown protein		Potri.006G125300 [exp]	18.49	0.8472
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Potri.011G103700 [exp]	19.74	0.8629
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Potri.017G092400 [exp]	26.15	0.8762
AT5G10840			Endomembrane protein 70 protei...		Potri.006G264500 [exp]	30.65	0.8923

Compare expression of checked genes

Potri.003G043900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.