Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATTIM23.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17530 180 / 7e-58 ATTIM23-1 translocase of inner mitochondrial membrane 23 (.1) AT1G72750 178 / 4e-57 ATTIM23-2 translocase inner membrane subunit 23-2 (.1) AT3G04800 114 / 3e-32 ATTIM23-3 translocase inner membrane subunit 23-3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G198100 [exp] 238 / 7e-81 AT1G17530 154 / 6e-48 translocase of inner mitochondrial membrane 23 (.1) Potri.013G039200 [exp] 135 / 2e-40 AT3G04800 190 / 5e-62 translocase inner membrane subunit 23-3 (.1) Potri.005G051800 [exp] 133 / 1e-39 AT3G04800 187 / 4e-61 translocase inner membrane subunit 23-3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006020 [exp] 202 / 2e-66 AT1G17530 248 / 1e-84 translocase of inner mitochondrial membrane 23 (.1) Lus10008470 [exp] 196 / 3e-64 AT1G17530 244 / 3e-83 translocase of inner mitochondrial membrane 23 (.1) Lus10009183 [exp] 135 / 2e-40 AT1G17530 198 / 4e-65 translocase of inner mitochondrial membrane 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02466 [poplar] [flax] Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence Show only first row Show all	>Potri.003G044100.1 pacid=42785391 polypeptide=Potri.003G044100.1.p locus=Potri.003G044100 ID=Potri.003G044100.1.v4.1 annot-version=v4.1 ATGTCCTACTCCGATAGTAATTCGGATCAACCCTCACCGGCTACCCGTCTCTACAACCCCTATCAGGATCTTCACCTTCCTTCCCAAACACTCTACCACC TTCCCACCTCGCCGGAATTCCTCTTTACCGAAGAATCTCTCCGCCAACGCCGCTCCTGGGGCGAAAACCTTACCTTCTACACTGGCTCCGCCTACCTCAC CGCATCTCTTGCTGGCGGCGGCTCCGGGTTCTTCTCCGCCCTCCGATCCTTCGAGCCCACTGACACCCTCAAGCTCAAGGTCAATAGGATCCTCAACTCC TCTGGCCATTCGGGTCGGATCTGGGGCAACCGGGTCGGGATTGCGGGTTTGATTTATGCCATGATGGAGAGTGGCATCGTAGCGGTCACCGATAGGGATG ATGTGTGGAGTAGCGTGGCAGCTGGGCTTGGAACTGGGGCGGTTTGTAGGGCGGCCAGAGGGGTTCGGTCAGCGGCAGTGGCAGGTGCTCTTGGTGGATT AGCTGCTGGTGCGGTGGTGGCTGGGAAGCAGGCGTTGAAGAGGTATGCAATGATTTGA
AA sequence Show only first row Show all	>Potri.003G044100.1 pacid=42785391 polypeptide=Potri.003G044100.1.p locus=Potri.003G044100 ID=Potri.003G044100.1.v4.1 annot-version=v4.1 MSYSDSNSDQPSPATRLYNPYQDLHLPSQTLYHLPTSPEFLFTEESLRQRRSWGENLTFYTGSAYLTASLAGGGSGFFSALRSFEPTDTLKLKVNRILNS SGHSGRIWGNRVGIAGLIYAMMESGIVAVTDRDDVWSSVAAGLGTGAVCRAARGVRSAAVAGALGGLAAGAVVAGKQALKRYAMI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Potri.003G044100 [exp]	0	1	Pt-ATTIM23.1
AT3G04800		ATTIM23-3	translocase inner membrane sub...		Potri.013G039200 [exp]	1.00	0.9263
AT1G12830			unknown protein		Potri.001G323000 [exp]	2.00	0.8987
AT3G06790			plastid developmental protein ...		Potri.010G007200 [exp]	4.24	0.8755
AT4G21800		QQT2	quatre-quart2, P-loop containi...		Potri.010G148000 [exp]	4.89	0.8563
AT1G32260			unknown protein		Potri.003G095600 [exp]	4.89	0.8851
AT3G48800			Sterile alpha motif (SAM) doma...		Potri.001G062800 [exp]	6.63	0.8639
AT5G04010			F-box family protein (.1)		Potri.004G077301 [exp]	7.48	0.8729
AT1G71800		CSTF64	cleavage stimulating factor 64...		Potri.002G061200 [exp]	7.93	0.8682
AT2G15910			CSL zinc finger domain-contain...		Potri.009G109100 [exp]	9.11	0.7953
AT2G03820			nonsense-mediated mRNA decay N...		Potri.017G137500 [exp]	10.19	0.8389

Compare expression of checked genes

Potri.003G044100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.