Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57060 103 / 2e-30 unknown protein AT4G26060 101 / 3e-29 Ribosomal protein L18ae family (.1) AT1G54217 87 / 6e-24 Ribosomal protein L18ae family (.1.2.3) AT1G29970 41 / 3e-05 RPL18AA 60S ribosomal protein L18A-1 (.1.2.3) AT3G14595 39 / 0.0001 Ribosomal protein L18ae family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G198700 [exp] 144 / 1e-46 AT4G26060 107 / 3e-31 Ribosomal protein L18ae family (.1) Potri.006G146300 [exp] 97 / 3e-27 AT4G26060 152 / 2e-48 Ribosomal protein L18ae family (.1) Potri.018G050900 [exp] 96 / 7e-27 AT4G26060 151 / 4e-48 Ribosomal protein L18ae family (.1) Potri.001G380200 [exp] 37 / 0.0004 AT1G17080 127 / 3e-38 Ribosomal protein L18ae family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011943 [exp] 100 / 1e-27 AT4G26060 150 / 4e-47 Ribosomal protein L18ae family (.1) Lus10027625 [exp] 96 / 2e-26 AT4G26060 147 / 2e-46 Ribosomal protein L18ae family (.1) Lus10026180 [exp] 47 / 2e-07 AT1G29970 63 / 7e-12 60S ribosomal protein L18A-1 (.1.2.3) Lus10042485 [exp] 45 / 5e-07 AT3G17940 113 / 2e-31 Galactose mutarotase-like superfamily protein (.1) Lus10026193 [exp] 39 / 7e-05 AT1G17080 87 / 3e-22 Ribosomal protein L18ae family (.1) Lus10042474 [exp] 39 / 0.0002 AT1G53560 85 / 1e-20 Ribosomal protein L18ae family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G044400.8 pacid=42786252 polypeptide=Potri.003G044400.8.p locus=Potri.003G044400 ID=Potri.003G044400.8.v4.1 annot-version=v4.1 ATGAACCATATAGAAGATGAGTATGTTCCCATTAGAGATGCGGAGGATGCCCAACTGGGAATGTTTGACAAACCCCTTCCTTGCTTTGGCTGTGGAATTG GATGGTTTTCCCTTTTGCTTGGATTTGTGTTCCCACTGATGTGGTACTTCTCAGCAATTCTCTACTTTGGGAAGTACTATAACAAGGATCCAAGGGAGCG ATCTGGCCTTGCTGCGTGTGCAATAGCTGCTATAACGTTCACAGTAGCTGCGGTGATCACTTTGCTCGTTTATTTGTTGTGA
AA sequence Show only first row Show all	>Potri.003G044400.8 pacid=42786252 polypeptide=Potri.003G044400.8.p locus=Potri.003G044400 ID=Potri.003G044400.8.v4.1 annot-version=v4.1 MNHIEDEYVPIRDAEDAQLGMFDKPLPCFGCGIGWFSLLLGFVFPLMWYFSAILYFGKYYNKDPRERSGLAACAIAAITFTVAAVITLLVYLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57060			unknown protein		Potri.003G044400 [exp]	0	1
AT5G20220			zinc knuckle (CCHC-type) famil...		Potri.010G092600 [exp]	1.41	0.8709
AT4G01100		ADNT1	adenine nucleotide transporter...		Potri.001G094100 [exp]	3.74	0.8387
AT3G13350	ARID		HMG (high mobility group) box ...		Potri.011G168800 [exp]	7.41	0.8281
AT4G38090			Ribosomal protein S5 domain 2-...		Potri.007G010400 [exp]	8.94	0.8347
AT2G04230			FBD, F-box and Leucine Rich Re...		Potri.004G020200 [exp]	9.16	0.8129
AT1G19690			NAD(P)-binding Rossmann-fold s...		Potri.002G031500 [exp]	10.19	0.7554
AT1G16445			S-adenosyl-L-methionine-depend...		Potri.007G069400 [exp]	10.81	0.8167
AT1G18490			Protein of unknown function (D...		Potri.015G055600 [exp]	10.95	0.8393
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Potri.011G117300 [exp]	11.48	0.8515	Pt-HLS3.1
AT4G24770		CP31, ATRBP33, ...	ARABIDOPSIS THALIANA RNA BINDI...		Potri.001G340800 [exp]	12.00	0.8687

Compare expression of checked genes

Potri.003G044400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.