Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73030 335 / 1e-118 CHMP1A, VPS46.2 CHARGED MULTIVESICULAR BODY PROTEIN/CHROMATIN MODIFYING PROTEIN1A, SNF7 family protein (.1) AT1G17730 329 / 3e-116 CHMP1B, VPS46.1 CHARGED MULTIVESICULAR BODY PROTEIN/CHROMATIN MODIFYING PROTEIN1B, vacuolar protein sorting 46.1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G194400 [exp] 353 / 1e-125 AT1G73030 340 / 1e-120 CHARGED MULTIVESICULAR BODY PROTEIN/CHROMATIN MODIFYING PROTEIN1A, SNF7 family protein (.1) Potri.006G158538 [exp] 353 / 1e-125 AT1G73030 340 / 1e-120 CHARGED MULTIVESICULAR BODY PROTEIN/CHROMATIN MODIFYING PROTEIN1A, SNF7 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037607 [exp] 335 / 2e-118 AT1G17730 378 / 1e-135 CHARGED MULTIVESICULAR BODY PROTEIN/CHROMATIN MODIFYING PROTEIN1B, vacuolar protein sorting 46.1 (.1) Lus10006868 [exp] 335 / 2e-118 AT1G17730 378 / 1e-135 CHARGED MULTIVESICULAR BODY PROTEIN/CHROMATIN MODIFYING PROTEIN1B, vacuolar protein sorting 46.1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0235 [poplar] [flax] PspA PF03357 [poplar] [flax] Snf7 Snf7
Representative CDS sequence Show only first row Show all	>Potri.003G045300.1 pacid=42787132 polypeptide=Potri.003G045300.1.p locus=Potri.003G045300 ID=Potri.003G045300.1.v4.1 annot-version=v4.1 ATGGGAAACACAGATAAGCTTTTGAATCAGATCATGGACTTGAAATTCACATCGAAATCGCTGCAAAGGCAGTCAAGGAAGTGCGAGAAGGAAGAGAAAT CGGAGAAATTGAAAGTGAAGAAGGCGATCGAGAAAGGAAACATGGACGGTGCTCGGATCTATGCTGAGAACGCCATTCGTAAGAGGACTGAACAGATGAA TTACTTGAGGCTCTCCTCCAGGCTCGATGCCGTTGTCGCTAGGCTTGATACTCAGGCTAAGATGACCACCATTAACAAGTCCATGGGTTCTATTGTTAAG TCCCTCGAGTCTACTCTCGCTACTGGTAATTTGCAGAAGATGTCGGAGACAATGGATCAGTTTGAGAAGCAGTTTGTGAATATGGAGGTGCAGGCAGAGT TCATGGAGAGTTCTATGGCTGGGTCTACCTCCCTTTCCACACCTGAGGGTGAGGTCAACAGCTTGATGCAGCAGGTAGCTGATGACTATGGATTGGAGGT CTCTGTTGGGCTGCCACAGCCTGCTGCTCATGCAGTGGCAACCAGTTCGCAGGAGAAGGTGGGTGAGGATGATTTATCAAGGCGGCTTGCAGAGCTTAAG GCCAAAGGGTAA
AA sequence Show only first row Show all	>Potri.003G045300.1 pacid=42787132 polypeptide=Potri.003G045300.1.p locus=Potri.003G045300 ID=Potri.003G045300.1.v4.1 annot-version=v4.1 MGNTDKLLNQIMDLKFTSKSLQRQSRKCEKEEKSEKLKVKKAIEKGNMDGARIYAENAIRKRTEQMNYLRLSSRLDAVVARLDTQAKMTTINKSMGSIVK SLESTLATGNLQKMSETMDQFEKQFVNMEVQAEFMESSMAGSTSLSTPEGEVNSLMQQVADDYGLEVSVGLPQPAAHAVATSSQEKVGEDDLSRRLAELK AKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73030		CHMP1A, VPS46.2	CHARGED MULTIVESICULAR BODY PR...		Potri.003G045300 [exp]	0	1
AT1G09920			TRAF-type zinc finger-related ...		Potri.002G109800 [exp]	1.73	0.7504
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Potri.004G232600 [exp]	3.46	0.7237	Pt-ATGSTZ2.1
AT3G43810		CAM7	calmodulin 7 (.1)		Potri.016G024700 [exp]	6.32	0.6820	Pt-CAM6.1
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Potri.006G185000 [exp]	7.07	0.7184	Pt-EIF.4
AT3G10640		VPS60.1	SNF7 family protein (.1.2)		Potri.008G018300 [exp]	7.48	0.7112
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Potri.018G110700 [exp]	8.71	0.7368
AT3G22950		ATARFC1	ADP-ribosylation factor C1 (.1...		Potri.012G139900 [exp]	10.81	0.7088
AT4G35980			unknown protein		Potri.005G111900 [exp]	11.83	0.6995
AT2G24860			DnaJ/Hsp40 cysteine-rich domai...		Potri.006G266800 [exp]	13.19	0.7182
AT5G42990		UBC18	ubiquitin-conjugating enzyme 1...		Potri.005G232100 [exp]	14.00	0.6375

Compare expression of checked genes

Potri.003G045300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.