Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19730 230 / 5e-79 Ribosomal L28e protein family (.1.2.3) AT4G29410 226 / 1e-77 Ribosomal L28e protein family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G194000 [exp] 241 / 2e-83 AT2G19730 227 / 1e-77 Ribosomal L28e protein family (.1.2.3) Potri.006G212501 [exp] 47 / 1e-07 AT4G29410 45 / 2e-07 Ribosomal L28e protein family (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006869 [exp] 239 / 1e-82 AT2G19730 218 / 3e-74 Ribosomal L28e protein family (.1.2.3) Lus10037609 [exp] 238 / 6e-82 AT2G19730 221 / 2e-75 Ribosomal L28e protein family (.1.2.3) Lus10012914 [exp] 236 / 4e-81 AT4G29410 224 / 7e-77 Ribosomal L28e protein family (.1.2) Lus10012915 [exp] 235 / 6e-81 AT4G29410 224 / 1e-76 Ribosomal L28e protein family (.1.2) Lus10032699 [exp] 226 / 1e-77 AT4G29410 219 / 1e-74 Ribosomal L28e protein family (.1.2) Lus10032698 [exp] 115 / 4e-33 ND 134 / 1e-40
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01778 [poplar] [flax] Ribosomal_L28e Ribosomal L28e protein family
Representative CDS sequence Show only first row Show all	>Potri.003G045500.5 pacid=42786351 polypeptide=Potri.003G045500.5.p locus=Potri.003G045500 ID=Potri.003G045500.5.v4.1 annot-version=v4.1 ATGGCGACAGTACCAGGACAACTGATATGGGAGATAGTTAAGAAGAATAACTGCTTTTTGGTGAAGCAGTTTGGAAGAGGAACTGCTAGCCTTCGGTTCA GCAAAGAGAGCAACAATCTCTACAACCTTAACTCTTACAAGCACTCTGGTTTGGCAAACAAGAAAACTGTCACCATTCAGGCTGGGGACAAGGATCAAGC TGTGGTTCTTGCTACAAGTAAGACCAAGAAGCAGAACAAACCAGCAGCTTTGTTTCACAAATCTGTCATGAAGAAGGAGTTCCGCCGCATGGCTAAGGCT GTGGAGAACCAGGTAGAAGGTAACTATTACAGGCCTGATCTGAAGAAAGCAGCTCTTGCAAGGTTGAGTGCTGTGCACAGGAGTCTTAAGGTAGCCAAGT CTGGTGTCAAGAAGAGGAATAGACAAGGTTTGAAGATTTGCTGA
AA sequence Show only first row Show all	>Potri.003G045500.5 pacid=42786351 polypeptide=Potri.003G045500.5.p locus=Potri.003G045500 ID=Potri.003G045500.5.v4.1 annot-version=v4.1 MATVPGQLIWEIVKKNNCFLVKQFGRGTASLRFSKESNNLYNLNSYKHSGLANKKTVTIQAGDKDQAVVLATSKTKKQNKPAALFHKSVMKKEFRRMAKA VENQVEGNYYRPDLKKAALARLSAVHRSLKVAKSGVKKRNRQGLKIC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19730			Ribosomal L28e protein family ...		Potri.003G045500 [exp]	0	1
AT3G05590		RPL18	ribosomal protein L18 (.1)		Potri.013G013600 [exp]	1.41	0.9734	RPL18.11
AT2G19730			Ribosomal L28e protein family ...		Potri.001G194000 [exp]	1.41	0.9731
AT5G04800			Ribosomal S17 family protein (...		Potri.008G017300 [exp]	2.00	0.9698
AT4G25740			RNA binding Plectin/S10 domain...		Potri.017G146700 [exp]	2.23	0.9692	RPS10.3
AT5G62300			Ribosomal protein S10p/S20e fa...		Potri.012G128300 [exp]	2.44	0.9713	Pt-RPS20.1
AT3G13580			Ribosomal protein L30/L7 famil...		Potri.010G250900 [exp]	2.64	0.9683	Pt-RPL7.4
AT4G16720			Ribosomal protein L23/L15e fam...		Potri.014G057300 [exp]	4.12	0.9574	Pt-RPL15.5
AT5G59850			Ribosomal protein S8 family pr...		Potri.003G114800 [exp]	4.24	0.9685	RPS15.1
AT1G09690			Translation protein SH3-like f...		Potri.003G159500 [exp]	6.70	0.9629	RPL21.1
AT5G59850			Ribosomal protein S8 family pr...		Potri.001G118100 [exp]	6.92	0.9574	Pt-WRP15.2

Compare expression of checked genes

Potri.003G045500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.