Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51745 362 / 4e-116 Tudor/PWWP/MBT superfamily protein (.1.2) AT3G21295 333 / 5e-104 Tudor/PWWP/MBT superfamily protein (.1) AT3G03140 177 / 2e-46 Tudor/PWWP/MBT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G193900 [exp] 1218 / 0 AT1G51745 360 / 3e-115 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.019G048100 [exp] 169 / 1e-43 AT3G03140 364 / 3e-114 Tudor/PWWP/MBT superfamily protein (.1) Potri.013G081400 [exp] 166 / 1e-42 AT3G03140 202 / 5e-55 Tudor/PWWP/MBT superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037614 [exp] 647 / 0 AT3G21295 370 / 3e-119 Tudor/PWWP/MBT superfamily protein (.1) Lus10006874 [exp] 642 / 0 AT1G51745 338 / 1e-106 Tudor/PWWP/MBT superfamily protein (.1.2) Lus10013363 [exp] 175 / 6e-46 AT3G03140 322 / 1e-99 Tudor/PWWP/MBT superfamily protein (.1) Lus10004108 [exp] 174 / 1e-45 AT3G03140 311 / 3e-95 Tudor/PWWP/MBT superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [poplar] [flax] Tudor PF00855 [poplar] [flax] PWWP PWWP domain
Representative CDS sequence Show only first row Show all	>Potri.003G045600.1 pacid=42786527 polypeptide=Potri.003G045600.1.p locus=Potri.003G045600 ID=Potri.003G045600.1.v4.1 annot-version=v4.1 ATGGGTAGTAGCTCCGCTGACCCCAACTGTAATATCAACAACATCAACACCAAAGCCATTGATGCATCTGTGGGTGCTTTAGTTTGGGTCCGCCGGAGAA ACGGCTCATGGTGGCCGGGTCGGATTGTGGGTCTCGATGAGATTTCTGAGGGTAGTTTGGTCTCGCCAAGATCAGGCACTCCTGTTAAACTTCTTGGCCG CGAGGATGCCAGTGTGGATTGGTATAATCTTGAAAAGTCAAAGAGGGTGAAGGCATTTCGATGTGGGGAATATGATGAATGCATTGAAAAGGCAAAGACT TCCGCTGCAAATGGTAATAAGAGAGCTGTGAAATATGCTCGGAGAGAAGATGCCATTCTCCACGCCTTAGAGATTGAGAATGCTCGCCTAGGCAGGGATC AACTGGACTTCTTCTCTAGAAGTGATAATTTGGGTGAAGAGCATGGTAGTTCAGCCAAAGAATCAAGCATGTCTTTTTCTGGAAAAGAAGATGGTGATAT GACTGATGGGGATAGTTATTCTGAAGACAATTCAGACATGGATGCAGATTCAGATTCTGGTTTGAATACTGATTCAGGCTTGGGTTCAGATTTAGCACCA GAATTATCAGAGTCTGGTACATCCTCTGAGGAGCCAAATTATAATGGTGCTTGTAAGATGCAGTCTTTGCCAGGAAAGAGGAGAAGAACCCCAAATGATT CTGAGGATGATGGAACAGAAGGAATTAAGCGAATGAGAGGACTTGAGGATCTTGGAATTGGTGTAGGAGATTCAAACACTGGGAATTGTATGCATAATAT CTGTCCTGTAAATGGTAGCAAAGGTTATAACTTGTTACTGAAAAGAAAAAGGTCTCAAGTAGCAAATGTTAATGAGCTCTTGAAAAGAAAAAATCGTCAC CGACCATTGACAAAAGTTTTAGAGAGTACGGCCATGGTGTGTGTTCCAGTTATTTGTGACCATCTTTCCAGTCCAAGTAGCTTGCCTCTTCCGGGATTAT CTGACGGTAAGATTTCTGGAATAGAATCAAATGGGTCTAGAAAAGACTGTTCCTTTGCAACCAATAATAACTCAGACAGTTATGGAGTTTCTTGTGAGAA TGGTAGCTCATCAAAGTCTTCTGATCATGCTTATGATGCTGCTCTCATTAATCACAAGTTGAAGAAGGAAAAAGATATTTCCAGCATATCCAGGCCAGCT GAGAACATTTCTGTGGACAGGTTATTTGATGTGCCATTTGTTGGGGAGGAAAAACACTCTACAGGTTTTTCTCCAATACTTGTGTCCTGTTCACCTGGAA AGCATCAAATTGGTGGATTGGGGAAGCAATTTAGTCAAAGCAGTCAAGCAGAAGCTGTATTGTTGAAAAATGAAGCATGCAACGAATCTGGTTCTACTAG TCTGGCAGCTGCCTGTATTTATAATAATTTCAGCCAGAGGATAGAGAAAGGTGCTTCAAAGTGGCAGTTAAAAGGAAAGAGGAATTCAAGACACACAAGT AAAAATAGAAAGCAAGACTCAAGAAAAGATGACATGGATGATGAACCCAATGCTTACTTGGCAGGTATGGAGCACTTGGATGGATTCCGTCAGGGTCCTG ATCAGAAAGTTGATTGTGGTGGAGGTAAATCCGAACCGTTTTCTGAATACCGTGTGGATGCTGTTCGGGACAGGAGCAAGTCTTCTTCTCATGGGGAAGG TATGAGGGCGGCAACGGTGGAGTTGTCTGTGCCTCAAAGGTCACTTCCGTACCGTCAATCACGCTTCATGGTTAATTCCAGATATCAGACATCAGATTTT CCTGGAAGAAATCTCTCCTCGTGTTCAAAACTATTTAATGTTGAGATCAAGGTTCAACGCAACTACCGGCAGCAGCATGTTCCGTTGGTTTCTCTAATGA GTAAATTGAATGGTAAAGCCATTGTCGGTCACCCTTTAACAATTGAGAATCTAGATGATGGCTATTCTGATCTTATGCTTGGTAGTAATGAAAGGGATAC AACTCATGTTACGGAAGGGGAAACTCCCAAACCGGGTTATGTGGCTATGCGAAATATAGAGGCTGGTAGGACACCTGCCAGGCGTATGACAATGAAACCA AGATCTTCACCAAGAAAATCACACAAATTAAGGAAATGTGGGTTGCTTTCTAAAAAGATTCGGAAACTGTCTTCTTTGACAGGGAAAAGAGTAGAAGATA GAAAACCGGTGGTGGAGAAGCCTGAGGGTCCTGTTATAGCTTGTATCCCCCTCAAACTAGTGTTCAGTAGGATAAATGAGGCAGTGAATGGTTCAGCAAG GCAAACACACCGTGCCTTACCATCAAGCAACTCGTGA
AA sequence Show only first row Show all	>Potri.003G045600.1 pacid=42786527 polypeptide=Potri.003G045600.1.p locus=Potri.003G045600 ID=Potri.003G045600.1.v4.1 annot-version=v4.1 MGSSSADPNCNINNINTKAIDASVGALVWVRRRNGSWWPGRIVGLDEISEGSLVSPRSGTPVKLLGREDASVDWYNLEKSKRVKAFRCGEYDECIEKAKT SAANGNKRAVKYARREDAILHALEIENARLGRDQLDFFSRSDNLGEEHGSSAKESSMSFSGKEDGDMTDGDSYSEDNSDMDADSDSGLNTDSGLGSDLAP ELSESGTSSEEPNYNGACKMQSLPGKRRRTPNDSEDDGTEGIKRMRGLEDLGIGVGDSNTGNCMHNICPVNGSKGYNLLLKRKRSQVANVNELLKRKNRH RPLTKVLESTAMVCVPVICDHLSSPSSLPLPGLSDGKISGIESNGSRKDCSFATNNNSDSYGVSCENGSSSKSSDHAYDAALINHKLKKEKDISSISRPA ENISVDRLFDVPFVGEEKHSTGFSPILVSCSPGKHQIGGLGKQFSQSSQAEAVLLKNEACNESGSTSLAAACIYNNFSQRIEKGASKWQLKGKRNSRHTS KNRKQDSRKDDMDDEPNAYLAGMEHLDGFRQGPDQKVDCGGGKSEPFSEYRVDAVRDRSKSSSHGEGMRAATVELSVPQRSLPYRQSRFMVNSRYQTSDF PGRNLSSCSKLFNVEIKVQRNYRQQHVPLVSLMSKLNGKAIVGHPLTIENLDDGYSDLMLGSNERDTTHVTEGETPKPGYVAMRNIEAGRTPARRMTMKP RSSPRKSHKLRKCGLLSKKIRKLSSLTGKRVEDRKPVVEKPEGPVIACIPLKLVFSRINEAVNGSARQTHRALPSSNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51745			Tudor/PWWP/MBT superfamily pro...		Potri.003G045600 [exp]	0	1
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Potri.014G085400 [exp]	7.48	0.6249
AT5G18610			Protein kinase superfamily pro...		Potri.010G021500 [exp]	8.36	0.6864
AT5G12100			pentatricopeptide (PPR) repeat...		Potri.010G249800 [exp]	9.38	0.6518
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Potri.012G110400 [exp]	9.38	0.6866
AT5G16260		ELF9	EARLY FLOWERING 9, RNA binding...		Potri.008G078200 [exp]	15.49	0.5992
AT3G28720			unknown protein		Potri.004G123900 [exp]	16.27	0.6358
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Potri.010G039900 [exp]	18.33	0.6258	ALA3.3
AT3G20420		RTL2, ATRTL2	RNASEIII-LIKE 2, RNAse THREE-l...		Potri.011G086700 [exp]	36.27	0.5882
AT5G50120			Transducin/WD40 repeat-like su...		Potri.015G070900 [exp]	38.83	0.5560
AT3G48195			Phox (PX) domain-containing pr...		Potri.015G078300 [exp]	39.11	0.5790

Compare expression of checked genes

Potri.003G045600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.