Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATRLI1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19210 1157 / 0 ABCE2, ATRLI2 ARABIDOPSIS THALIANA RNASE L INHIBITOR PROTEIN 2, ATP-binding cassette E2, RNAse l inhibitor protein 2 (.1) AT3G13640 1008 / 0 ABCE1, ATRLI1 ATP-binding cassette E1, RNAse l inhibitor protein 1 (.1) AT4G30300 222 / 3e-69 ABCE3, ATNAP15 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 15, ATP-binding cassette E3, non-intrinsic ABC protein 15 (.1) AT5G64840 79 / 4e-15 ABCF5, ATGCN5 ATP-binding cassette F5, general control non-repressible 5 (.1) AT4G25750 65 / 9e-11 ABCG4 ATP-binding cassette G4, ABC-2 type transporter family protein (.1) AT3G55100 60 / 3e-09 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT5G19410 60 / 4e-09 ABCG23 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) AT3G47770 60 / 5e-09 ATATH5, ABCA6 A. THALIANA ABC2 HOMOLOG 5, ATP-binding cassette A6, ABC2 homolog 5 (.1) AT3G47790 59 / 7e-09 ABCA8, ATATH7 ATP-binding cassette A8, ABC2 homolog 7 (.1) AT3G52310 59 / 7e-09 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G235900 [exp] 1217 / 0 AT4G19210 1170 / 0.0 ARABIDOPSIS THALIANA RNASE L INHIBITOR PROTEIN 2, ATP-binding cassette E2, RNAse l inhibitor protein 2 (.1) Potri.005G064300 [exp] 67 / 3e-11 AT2G13610 900 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.005G084800 [exp] 61 / 2e-09 AT5G64840 983 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Potri.009G070100 [exp] 61 / 2e-09 AT5G19410 707 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Potri.007G104801 [exp] 59 / 5e-09 AT2G13610 949 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.011G112100 [exp] 59 / 9e-09 AT1G53270 753 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.001G354900 [exp] 59 / 1e-08 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.005G062800 [exp] 57 / 1e-08 AT4G33460 346 / 5e-121 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) Potri.007G080600 [exp] 57 / 2e-08 AT5G64840 936 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033309 [exp] 1180 / 0 AT4G19210 1166 / 0.0 ARABIDOPSIS THALIANA RNASE L INHIBITOR PROTEIN 2, ATP-binding cassette E2, RNAse l inhibitor protein 2 (.1) Lus10034771 [exp] 1177 / 0 AT4G19210 1167 / 0.0 ARABIDOPSIS THALIANA RNASE L INHIBITOR PROTEIN 2, ATP-binding cassette E2, RNAse l inhibitor protein 2 (.1) Lus10005798 [exp] 77 / 2e-14 AT5G64840 1049 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10006804 [exp] 75 / 8e-14 AT5G64840 1050 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10035195 [exp] 65 / 4e-11 AT5G14100 333 / 2e-115 ARABIDOPSIS THALIANANON-INTRINSIC ABC PROTEIN 14, ATP-binding cassette I11, non-intrinsic ABC protein 14 (.1) Lus10004496 [exp] 66 / 8e-11 AT2G13610 729 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10029905 [exp] 65 / 1e-10 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10000827 [exp] 61 / 8e-10 AT4G33460 362 / 5e-127 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) Lus10027545 [exp] 61 / 2e-09 AT5G52860 781 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Lus10004519 [exp] 58 / 1e-08 AT1G02520 636 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0344 [poplar] [flax] 4Fe-4S PF00037 [poplar] [flax] Fer4 4Fe-4S binding domain CL0344 [poplar] [flax] 4Fe-4S PF04068 [poplar] [flax] RLI Possible Fer4-like domain in RNase L inhibitor, RLI
Representative CDS sequence Show only first row Show all	>Potri.003G045700.7 pacid=42786508 polypeptide=Potri.003G045700.7.p locus=Potri.003G045700 ID=Potri.003G045700.7.v4.1 annot-version=v4.1 ATGGCAGATCGATTGACGCGTATAGCCATAGTAACCTCTGATAGATGCAAGCCTAAGAAGTGCCGTCAAGAGTGCAAGAAGAGCTGCCCCGTTGTTAAAA CTGGGAAACTGTGTATAGAGGTGACTCCTATTTCGAAGATAGCTTTTATTTCGGAGGAGTTGTGCATTGGATGTGGTATCTGTGTCAAGAAATGCCCATT TGAAGCAATTCAGATCATTAACTTGCCTAAGGATTTGGATAAAGACACCACCCATCGTTATGGCCCCAATACCTTTAAGTTGCACAGGCTACCAGTTCCG AGGCCTGGGCAAGTTCTTGGCTTGGTTGGAACAAACGGCATTGGCAAGTCCACTGCTCTCAAAGTTCTAGCTGGAAAACTGAAACCTAATTTGGGTCGTT TCAATAACCCTCCTGATTGGCAGGAAATTCTGACTTACTTTCGAGGATCTGAGCTTCAGAATTACTTTACCCGTATCCTAGAGGATAATTTGAAGGCCAT CATAAAGCCTCAATATGTTGACCACATTCCAAGAGCAGTTCAAGGCAATGTCGGGCAAGTGCTTGACCAAAAAGATGAGAGCCACAGGAAGGCAGAACTT TGTCGTGATCTTGATCTGAACCAGGTTATAGATCGTAATGTGGGGGATTTATCAGGTGGAGAGCTCCAAAGATTTGCTATTGCTGTTGTTGCAATACAGA ATGCAGAGATATATATGTTTGATGAACCTTCAAGTTATCTTGATGTCAAGCAGAGGCTTAAAGCTGCCCAAGTTATCCGATCTTTGCTCAGGGCCAACAG CTATGTTATTGTGGTGGAGCATGATCTTAGTGTCCTGGACTATTTATCTGACTTCATTTGCTGCTTGTACGGGAAACCGGGTGCGTATGGAGTAGTAACC CTTCCCTTTTCTGTGAGAGAAGGTATCAATATATTTTTGTCTGGGTTTGTTCCTACGGAAAACCTACGATTCCGGGATGAATCTTTAACCTTCAAGGTTG CTGAGACCCCACAGGATAATGCTGAGGAGATTCAAACATATGCACGATACAAATACCCAACCATGAGTAAAACTCAGGGCAATTTCAAGCTTAGTGTCGT TGAGGGTGAATTTACTGACTCTCAGATTGTAGTAATGCTTGGTGAGAATGGGACAGGGAAGACAACATTTATCCGCATGCTGGCTGGTTTGCTGAAACCT GATACTATAGAAGATTCTGAATCTGAGATACCTGAGTTCAATGTTTCTTACAAACCCCAGAAGATAAGCCCCAAGTTTCAACACAGTGTCAGACAGTTAC TGCATTCAAAGATACGTGATTCGTATATGCATCCTCAGTTTGTTTCAGATGTCATGAAACCACTTCTTATTGAGCAACTGATGGATCAAGAAGTTGTAAA TCTATCTGGTGGAGAGTTGCAAAGAGTTGCATTATGTCTATGCCTTGGAAAGCCAGCAGACATTTATTTGATAGATGAACCAAGTGCGTATCTTGATTCT GAGCAGCGTATTGTTGCTTCAAAAGTCATCAAGAGGTTTATCCTACATGCAAAGAAGACTGCATTTGTGGTGGAGCATGATTTTATAATGGCAACATACC TGGCTGATAGAGTTATTGTGTACGAGGGACAGCCTTCTGTGGATTGTACAGCAAATTCTCCTCAGTCATTGTTGACTGGGATGAATCTCTTCTTGTCTCA TCTGGATATCACATTTAGACGAGACCCCACTAATTTCCGGCCAAGAATCAACAAATTGGACTCGACCAAGGACAGGGAGCAGAAAACTGCCGGGTCATAT TATTACCTGGATGATTGA
AA sequence Show only first row Show all	>Potri.003G045700.7 pacid=42786508 polypeptide=Potri.003G045700.7.p locus=Potri.003G045700 ID=Potri.003G045700.7.v4.1 annot-version=v4.1 MADRLTRIAIVTSDRCKPKKCRQECKKSCPVVKTGKLCIEVTPISKIAFISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVP RPGQVLGLVGTNGIGKSTALKVLAGKLKPNLGRFNNPPDWQEILTYFRGSELQNYFTRILEDNLKAIIKPQYVDHIPRAVQGNVGQVLDQKDESHRKAEL CRDLDLNQVIDRNVGDLSGGELQRFAIAVVAIQNAEIYMFDEPSSYLDVKQRLKAAQVIRSLLRANSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVT LPFSVREGINIFLSGFVPTENLRFRDESLTFKVAETPQDNAEEIQTYARYKYPTMSKTQGNFKLSVVEGEFTDSQIVVMLGENGTGKTTFIRMLAGLLKP DTIEDSESEIPEFNVSYKPQKISPKFQHSVRQLLHSKIRDSYMHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDS EQRIVASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGQPSVDCTANSPQSLLTGMNLFLSHLDITFRRDPTNFRPRINKLDSTKDREQKTAGSY YYLDD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Potri.003G045700 [exp]	0	1	Pt-ATRLI1.2
AT1G77840			Translation initiation factor ...		Potri.004G112200 [exp]	9.27	0.5800
AT1G72320		APUM23	pumilio 23 (.1.2.3)		Potri.003G073000 [exp]	13.78	0.7094
AT3G07050		NSN1	nucleostemin-like 1, GTP-bindi...		Potri.002G241100 [exp]	18.00	0.6790
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Potri.001G402500 [exp]	22.91	0.6705
AT2G28450	C3HZnF		zinc finger (CCCH-type) family...		Potri.009G013000 [exp]	26.38	0.6750
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Potri.006G113300 [exp]	37.81	0.5677
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Potri.006G205100 [exp]	38.57	0.6101	Pt-E2F3.1,E2Fa_1
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Potri.006G239900 [exp]	38.72	0.6359
AT3G16810		APUM24	pumilio 24 (.1)		Potri.008G211400 [exp]	40.81	0.6428
AT3G02010			Pentatricopeptide repeat (PPR)...		Potri.002G237100 [exp]	41.23	0.5934

Compare expression of checked genes

Potri.003G045700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.