Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77360 192 / 3e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62470 168 / 9e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G71060 166 / 1e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G14820 167 / 2e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62540 167 / 2e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G52640 160 / 2e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G20300 144 / 2e-37 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74900 133 / 4e-34 OTP43 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 128 / 1e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G73400 127 / 2e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G126600 [exp] 393 / 6e-133 AT1G77360 173 / 5e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G181900 [exp] 211 / 1e-62 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G102700 [exp] 174 / 1e-48 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G114700 [exp] 164 / 1e-44 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G245400 [exp] 152 / 2e-40 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G121400 [exp] 153 / 3e-40 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G079400 [exp] 131 / 6e-33 AT1G02420 649 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G098600 [exp] 126 / 5e-31 AT1G73400 670 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G070200 [exp] 125 / 6e-31 AT1G74900 590 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017633 [exp] 323 / 1e-105 AT1G77360 183 / 2e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009123 [exp] 322 / 5e-105 AT1G77360 156 / 1e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028520 [exp] 322 / 2e-102 AT5G37820 215 / 4e-64 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Lus10001588 [exp] 204 / 9e-59 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033591 [exp] 182 / 8e-54 AT1G77360 121 / 4e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001633 [exp] 176 / 4e-49 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030603 [exp] 172 / 5e-48 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 169 / 2e-46 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 168 / 2e-45 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003461 [exp] 162 / 3e-43 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.003G045800.1 pacid=42786689 polypeptide=Potri.003G045800.1.p locus=Potri.003G045800 ID=Potri.003G045800.1.v4.1 annot-version=v4.1 ATGGAGGCTGCGGCTGTAAACACTAACCGCAAAACCTCAAAACCTCAGTTTGAATCAAGCTTCGACTCTCAGGATATTTCCCCATCAGCTAGACTTCTCT TTGAAATCATAACAAGACCCTCATCTCATGATATTGAATCTGCACTCTCCTCCACTGGAATCCCACCCACTCATGATATTGTGCATGAAGTCCTCAAACT TTGCCACGAAAATGCCACTTCTGCAATCGCATTCTTTCGCTGGGCTGGCAGGACCCACAAGCTGACCTCATACGCCTGGAATTTGATGGTGGACTTACTA GGCAAGAACTGGATGTATGAGCCCATGTGGGATGCAGTTCGTACGATGAAACAAGAAGATATGTTGTCAATGGCAACTTTTGTTTCTGTTTTTGGAAGCT ACTGTATGGCTGGTAAATTTAATGAGGCTATAATGAGTTTTTATGTTATGGATAAATATGGTGTTCAGCAAGATGTTGTCGTGGTGAATTCGCTTTTGAC CGCCATTTGCCACGAGGAAAATCAGACAGCAAAGGCGTTGGAATTTTTCGACAAAATTAAGCTGAAAATCCCCCCCAATGCGGATACTTTTGCTATTTTG CTGGAAGGATGGGAGAAAGAAGGTGACGTGGCCAAAGCCAAGACTACATTTGGTGAGATGGTGATTAAAGTTGGTTGGAGTCCAGAGAATATGTCAGCAT ATGATTCTTTTTTGACAACACTTGTTCGTGGGTCGCAAGCAGATGAAGCTGTCAAGTTCCTTCGGGTGATGAAGGGGAAGAATTGCTTGCCAGGTTTGAA ATTTTTCTCTAATGCTCTTGATATGCTTGTTAAGCAGAATGATTCTACCCATGCCATCCCTCTGTGGGATATAATGGTGGGTAGTGGTTTGTTGCCTAAT TTGATCATGTATAATGCAATGATTGGCTTGCATTGCAACAACAATGATGTTGACAATGCATTTCGGTTGCTTGATGAGATGGTTTTCAATGGAGCTTTCC CAGATTTTTTGACCTTCAACATAATTTTCCGATGTTTGATCAAGAACAAGAAAGTTCACCGAGTAGGCAAATTCTTCTACGAGATGATAAAAAACGAAAG CCCTCCAACACATTTTGATTGCTCTGCAGCCATTATGACATTGATTGATGGTGGTGACCCTGAAATGGCAATTGAGATTTGGAACTACATAGTTGAGAAC CATGTCTTGCCTCTTGATGGAAGTGCAAATGCACTTCTCATTGGGTTTTGTAATTTAGGAAGGATGTCACAGGTGAGGCGGTTTGCAGAAGATATGCTTG ATAGAAGAATAAATATATATGAATCAACTATGAAGAAGTTGAAGGACTCTTTTGATAAAACAGGTAGACACGGAAGAGACAAGTATGATTGTCTCATTAG AAGATGGAAAGCTCCCTAG
AA sequence Show only first row Show all	>Potri.003G045800.1 pacid=42786689 polypeptide=Potri.003G045800.1.p locus=Potri.003G045800 ID=Potri.003G045800.1.v4.1 annot-version=v4.1 MEAAAVNTNRKTSKPQFESSFDSQDISPSARLLFEIITRPSSHDIESALSSTGIPPTHDIVHEVLKLCHENATSAIAFFRWAGRTHKLTSYAWNLMVDLL GKNWMYEPMWDAVRTMKQEDMLSMATFVSVFGSYCMAGKFNEAIMSFYVMDKYGVQQDVVVVNSLLTAICHEENQTAKALEFFDKIKLKIPPNADTFAIL LEGWEKEGDVAKAKTTFGEMVIKVGWSPENMSAYDSFLTTLVRGSQADEAVKFLRVMKGKNCLPGLKFFSNALDMLVKQNDSTHAIPLWDIMVGSGLLPN LIMYNAMIGLHCNNNDVDNAFRLLDEMVFNGAFPDFLTFNIIFRCLIKNKKVHRVGKFFYEMIKNESPPTHFDCSAAIMTLIDGGDPEMAIEIWNYIVEN HVLPLDGSANALLIGFCNLGRMSQVRRFAEDMLDRRINIYESTMKKLKDSFDKTGRHGRDKYDCLIRRWKAP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77360			Tetratricopeptide repeat (TPR)...		Potri.003G045800 [exp]	0	1
AT5G10810		ATER	ARABIDOPSIS THALIANA ENHANCER ...		Potri.018G017300 [exp]	1.00	0.9383
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Potri.018G127900 [exp]	2.44	0.9177
AT2G30780			Tetratricopeptide repeat (TPR)...		Potri.006G243000 [exp]	2.82	0.8914
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Potri.004G130400 [exp]	3.46	0.9056
AT4G37020			unknown protein		Potri.007G043200 [exp]	4.47	0.9083
AT3G60800			DHHC-type zinc finger family p...		Potri.001G117100 [exp]	5.00	0.9069
AT1G06730			pfkB-like carbohydrate kinase ...		Potri.002G042700 [exp]	7.48	0.8937
AT5G15080			Protein kinase superfamily pro...		Potri.010G033800 [exp]	8.48	0.8881
					Potri.003G149300 [exp]	10.58	0.8710
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Potri.009G096300 [exp]	11.40	0.8466

Compare expression of checked genes

Potri.003G045800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.