Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45320 164 / 2e-51 unknown protein AT4G26490 59 / 2e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G01410 44 / 2e-05 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G35960 42 / 7e-05 NHL12 NDR1/HIN1-like 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G234500 [exp] 278 / 3e-96 AT5G45320 173 / 7e-55 unknown protein Potri.015G002400 [exp] 45 / 7e-06 AT5G53730 227 / 7e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.012G006000 [exp] 43 / 3e-05 AT5G53730 225 / 4e-75 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037259 [exp] 223 / 2e-74 AT5G45320 182 / 2e-58 unknown protein Lus10035675 [exp] 219 / 2e-73 AT5G45320 174 / 9e-56 unknown protein Lus10016962 [exp] 49 / 4e-07 AT2G35980 237 / 3e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021287 [exp] 45 / 2e-05 AT2G35980 236 / 7e-79 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G046000.1 pacid=42785887 polypeptide=Potri.003G046000.1.p locus=Potri.003G046000 ID=Potri.003G046000.1.v4.1 annot-version=v4.1 ATGAAGACCCCGAAATTAGTATATCATCCCCCTCCCCGAACCCATTTTCTATGGTGGTGCGCTGCCATCTTATGTGCCCTCCTTACAACTGCAGTAATCA TAGCCGGCATCATCGTCTTCGTTGGCTACTTGGTAATCCACCCAAGAATTCCGGTCATCAGCGTTGTCGACGCTCATCTCCTTCATTTCAGCTATGACGG AGCAGGGATACTTGTGACGCAAATAAACATCGTGGTAAGGTCCAAGAATGACAACATGAAGGCTCATGCTAGCTTCTCAAATTTCAATCTTGAACTGTTC TTTGATGGGATTAGAATAGCAGTGCTGTCAACTGCGTCTCCCTATGAAGTAAGAAAGAACAGCTCTGTTGATTTTAATTATGACTACACCTCGGATCCTA TACCATTGAATCCCAAGCAAATGGATGATGTTGATGCATACCTAAAAGAGGATGAGGTACGCTTCGATTTGAAAGGAGGTGCAAGAGCTCGCTGGAAAGT CGGGGTTCTTGGATCAGTTGGCTTCTGGAGTCACTTGAATTGTCAGCTACATTTTCATCCATCAAATGGAAGCTACATATCCAGACGGTGCACCTCCAAG GCTAAATGA
AA sequence Show only first row Show all	>Potri.003G046000.1 pacid=42785887 polypeptide=Potri.003G046000.1.p locus=Potri.003G046000 ID=Potri.003G046000.1.v4.1 annot-version=v4.1 MKTPKLVYHPPPRTHFLWWCAAILCALLTTAVIIAGIIVFVGYLVIHPRIPVISVVDAHLLHFSYDGAGILVTQINIVVRSKNDNMKAHASFSNFNLELF FDGIRIAVLSTASPYEVRKNSSVDFNYDYTSDPIPLNPKQMDDVDAYLKEDEVRFDLKGGARARWKVGVLGSVGFWSHLNCQLHFHPSNGSYISRRCTSK AK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45320			unknown protein		Potri.003G046000 [exp]	0	1
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Potri.001G070200 [exp]	2.23	0.9295
AT4G24250		ATMLO13, MLO13	MILDEW RESISTANCE LOCUS O 13, ...		Potri.001G078800 [exp]	3.74	0.9460
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340400 [exp]	7.74	0.9377
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340200 [exp]	9.38	0.9312
AT5G51160			Ankyrin repeat family protein ...		Potri.014G051100 [exp]	9.94	0.9373
AT3G18670			Ankyrin repeat family protein ...		Potri.005G057900 [exp]	13.41	0.9293
AT5G62200			Embryo-specific protein 3, (AT...		Potri.010G214400 [exp]	17.20	0.9199
AT3G05620			Plant invertase/pectin methyle...		Potri.005G022700 [exp]	23.04	0.9196
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.017G071000 [exp]	23.51	0.9215
AT3G15680			Ran BP2/NZF zinc finger-like s...		Potri.006G251300 [exp]	27.14	0.9108

Compare expression of checked genes

Potri.003G046000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.