Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45280 540 / 0 Pectinacetylesterase family protein (.1.2) AT4G19410 540 / 0 Pectinacetylesterase family protein (.1.2) AT4G19420 489 / 3e-173 Pectinacetylesterase family protein (.1.2) AT1G57590 402 / 3e-138 Pectinacetylesterase family protein (.1) AT2G46930 397 / 1e-136 Pectinacetylesterase family protein (.1) AT3G62060 395 / 7e-136 Pectinacetylesterase family protein (.1) AT5G26670 390 / 4e-134 Pectinacetylesterase family protein (.1.2) AT3G05910 390 / 4e-134 Pectinacetylesterase family protein (.1.2) AT5G23870 372 / 6e-127 Pectinacetylesterase family protein (.1.2.3) AT1G09550 363 / 7e-124 Pectinacetylesterase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G233900 [exp] 709 / 0 AT5G45280 567 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.004G234100 [exp] 488 / 2e-172 AT4G19420 597 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.005G001500 [exp] 414 / 3e-143 AT3G05910 602 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.013G000900 [exp] 405 / 6e-140 AT3G05910 629 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.014G110900 [exp] 406 / 1e-139 AT3G62060 611 / 0.0 Pectinacetylesterase family protein (.1) Potri.010G004400 [exp] 385 / 1e-131 AT5G26670 559 / 0.0 Pectinacetylesterase family protein (.1.2) Potri.006G084900 [exp] 366 / 2e-124 AT3G09410 570 / 0.0 Pectinacetylesterase family protein (.1.3) Potri.012G142300 [exp] 362 / 5e-123 AT5G23870 511 / 0.0 Pectinacetylesterase family protein (.1.2.3) Potri.015G145400 [exp] 355 / 2e-120 AT5G23870 509 / 0.0 Pectinacetylesterase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033301 [exp] 602 / 0 AT5G45280 546 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10034762 [exp] 500 / 7e-178 AT4G19410 440 / 1e-154 Pectinacetylesterase family protein (.1.2) Lus10034767 [exp] 491 / 1e-173 AT4G19420 574 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10033305 [exp] 486 / 1e-171 AT4G19420 572 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10035682 [exp] 469 / 5e-165 AT4G19420 556 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10037269 [exp] 452 / 2e-156 AT4G19420 548 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10034766 [exp] 415 / 4e-144 AT4G19420 508 / 0.0 Pectinacetylesterase family protein (.1.2) Lus10038024 [exp] 397 / 1e-136 AT3G62060 610 / 0.0 Pectinacetylesterase family protein (.1) Lus10009966 [exp] 397 / 2e-136 AT3G62060 613 / 0.0 Pectinacetylesterase family protein (.1) Lus10007200 [exp] 387 / 3e-132 AT3G62060 585 / 0.0 Pectinacetylesterase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF03283 [poplar] [flax] PAE Pectinacetylesterase
Representative CDS sequence Show only first row Show all	>Potri.003G046200.1 pacid=42784796 polypeptide=Potri.003G046200.1.p locus=Potri.003G046200 ID=Potri.003G046200.1.v4.1 annot-version=v4.1 ATGGATGGTTCAAGTTTAGGCAAGTGGCTGTGTCTTATTGTTTACATACTGACATTGCTCAAGACAGAAGGAGCTAGCATTCCCATGACTATTGTCCAGG CTGCTGTTGCTAGAGGAGCTGTTTGCTTAGATGGGAGTCCACCAGGATACCACTTTGAGAAAGGATCTGGTTCTGGGATTAACAATTGGTTGGTTCACAT GGAGGGAGGAGGATGGTGTGAGAGTGTTGAGTCTTGTGTTTCTCGTAGGGACACTTACAAGGGTTCATCATTGAAAATGGAGAAGACAATGGGGTTCTCT GGCATACTAGGCAGCAAGCAAGCAGCTAATCCTGATTTTTATAACTGGAATAGAATCAAGATCAGATACTGTGATGGTTCATCATTTACTGGTGATGTGG AAGCTGTTGATCCGAAAACTAAGCTTTACTTCAGGGGAGAAAGGATTTGGCAGGCTGTCATTGATGATCTATTGGCGAAAGGAATGAGAAATGCTCGAAA TGCTATTCTTTCTGGATGCTCTGCTGGTGGATTGGCTGCTATTTTGCATTGTGATAAATTCCAGTCTCTCCTGCCTGCAAGTGCTAGGGTAAAATGTGTT TCTGATGCTGGTTATTTTATCCATGGAACGGACATCTCTGGAGGGTCTCGAATTGAATCCTTCTTCGGTCAAGTTGTTAAAACCCATGGATCAGCAAAGC ATTTGCCTGCATCATGCACTTCAAAAACGAGACCAGAATTGTGTTTCTTCCCACAATATGTGGCACAGGCCATGCGAACGCCACTTTTTATAATCAACTC AGCCTATGATTCCTGGCAGATAAAGAACATCCTTGCACCAACCGCTGTTGATTCCAAAAAAGAATGGAAGAACTGCAAGCTTGACTTGAAAAAGTGCTCG GCTACTCAACTCCAAACTGTGCAGAATTATAGGACACAATTCCTAAAAGCAGTGAATATTGGACTCGGCAGCTCTTCATCGAGAGGATTGTGGATAAATT CTTGCTACGCTCACTGCCAATCTGGGTCGGTATCTACGTGGTTAGCCGACAAATCCCCCGTGGTGGGCAATGTGAAAATCGGAAAGGCAGTTGGAGATTG GTTCTATGACCGAAGTGCCTTCGAAAAATCGATTGCGCTTACCCTTGCAACCCTACTTGCGTCAGTATTGATTCCGAATCATGAGAGCAGGCACCTAGTG TATATTTATTGTCATTAA
AA sequence Show only first row Show all	>Potri.003G046200.1 pacid=42784796 polypeptide=Potri.003G046200.1.p locus=Potri.003G046200 ID=Potri.003G046200.1.v4.1 annot-version=v4.1 MDGSSLGKWLCLIVYILTLLKTEGASIPMTIVQAAVARGAVCLDGSPPGYHFEKGSGSGINNWLVHMEGGGWCESVESCVSRRDTYKGSSLKMEKTMGFS GILGSKQAANPDFYNWNRIKIRYCDGSSFTGDVEAVDPKTKLYFRGERIWQAVIDDLLAKGMRNARNAILSGCSAGGLAAILHCDKFQSLLPASARVKCV SDAGYFIHGTDISGGSRIESFFGQVVKTHGSAKHLPASCTSKTRPELCFFPQYVAQAMRTPLFIINSAYDSWQIKNILAPTAVDSKKEWKNCKLDLKKCS ATQLQTVQNYRTQFLKAVNIGLGSSSSRGLWINSCYAHCQSGSVSTWLADKSPVVGNVKIGKAVGDWFYDRSAFEKSIALTLATLLASVLIPNHESRHLV YIYCH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45280			Pectinacetylesterase family pr...		Potri.003G046200 [exp]	0	1
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Potri.006G228200 [exp]	4.58	0.8558
					Potri.010G001200 [exp]	4.69	0.8083
AT1G78172			unknown protein		Potri.002G096200 [exp]	7.21	0.8377
AT4G28320		MAN5, AtMAN5	endo-beta-mannase 5, Glycosyl ...		Potri.006G009400 [exp]	7.34	0.8147
AT3G24240			Leucine-rich repeat receptor-l...		Potri.005G117700 [exp]	8.48	0.8344
AT3G18050			unknown protein		Potri.015G040900 [exp]	8.66	0.8366
AT5G13460		IQD11	IQ-domain 11 (.1)		Potri.001G021000 [exp]	8.83	0.7825
AT2G04280			unknown protein		Potri.014G170200 [exp]	10.58	0.8184
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Potri.017G099100 [exp]	13.03	0.8132
AT5G02440			unknown protein		Potri.006G084400 [exp]	13.11	0.7653

Compare expression of checked genes

Potri.003G046200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.