Plant FIBer expression Database

Potri.003G046300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000528
[exp]
107 / 1e-25 ND /
PFAM info
Representative CDS sequence
>Potri.003G046300.3 pacid=42785224 polypeptide=Potri.003G046300.3.p locus=Potri.003G046300 ID=Potri.003G046300.3.v4.1 annot-version=v4.1
ATGGAAAACACAAAAACTGATGGAAAAGAAGAAGAAGAAGAAGAGAGTGTAGTGTTCGAAATTCCACTAGGAGACGCAGCAGAGACATTCAACTTAGAGA
AAGCAGTATGCAGCCATGGCTTATTCATGATGTCTCCCAACCATTGGGACCCTCTCTCCCTAACATTCTCTCGACCTTTGCGTCTCTCTCTATCTGATTC
TGATCCTCAAGTTTCCACTCCTACTACTTCACTCTTTGTCTCCATCTCTCACCCTCCTCACCTCCCTCGCTCTCTCAGCGTCCGCGTTTATGGCACGCGT
TGTCTCTCTCCAAAGCATCAAGAATCACTGGTGGCTCAGGTGGTGAGGATGCTGAGGTTGTCGGAAACAGATGAAAGGAATGCAAGAGAGTTTAGAAAGA
TAGCAGAGGCGGCAGCCGCGGAGGAAAATAATTCTTGGTTGACAGGTTTTGGTGGGAGAGTGTTTAGGTCTCCCACTTTGTTCGAGGATATGGTCAAGTG
CATTCTTCTTTGTAATTGCCAATGGCCGAGGACTTTGAGCATGGCTAGAGCACTTTGTGAGTTACAGTGTGAACTGCAGTGTAAATCATCTGGTGTGTTT
GTTGCTCAAGCTGTGAATGCGACTGTCAAGAATAAATGTAATGACACTGCTCATAATTTTATTCCGAACACGTCTGCTGGTAAAGAGTCCAAGAGAAATA
TCAGAGCATCTAAAGTTACAAAAAACTTAGCAAGCAAGATTGTGGAAACAGAAACCCTCTTGGAAGCTGATGCTAACTTGAAAACAGATAGTGCCCATAT
TGGAAGAGAAACTCTGGAGAGTGTAGAAAATGATTCATGTGCAAGATGCAGTTCACGTCATGGGTCTGATTCCTGTGCGCCTGATAGTCTTCAATCTCAG
CATGGAATACAACCTGGTGTGAACAAGATGATTTGTAATTTCCCCAGTCCAAGAGAACTAGCAAATCTTGATGAAAGTTTTCTGGCCAAGCGCTGCAATC
TTGGCTACCGAGCAATTCGAATCATAAAACTTGCTCAGAGTATTGTAGAAGGGAGGATTCCGCTAAGAGAAGTTGAAGAAGATTGTGCTAATGGAGCAAG
CTCTTCTTGCTATAACAAGTTGGCTGATCAGTTTAGACAGATAGATGGATTTGGTCCTTTCACATGCGCAAATGTGCTTATGTGCATGGGATTTTATCAT
ATCATTCCAACTGATTCTGAGACAGTGAGACATCTAAAACAGCTGTCAATACAGGTGCATGCAAAAAAATCCACCATTCAAACAGTTCAAAGGGATGTTG
AAGAGATATATGGAAAATATGCGCCATTCCAGTTCCTAGCATACTGGGCTGAGTTATGGCACTTCTATGAGAAAAGATTTGGGAAGCTAAGTGAAATACC
AACATCTGATTATAAACTTATTACTGCCAGCAATATGAGAAGTAAAGGTGGTCAGAAAAATAAGAGGACTAAAAGATGCTAA
AA sequence
>Potri.003G046300.3 pacid=42785224 polypeptide=Potri.003G046300.3.p locus=Potri.003G046300 ID=Potri.003G046300.3.v4.1 annot-version=v4.1
MENTKTDGKEEEEEESVVFEIPLGDAAETFNLEKAVCSHGLFMMSPNHWDPLSLTFSRPLRLSLSDSDPQVSTPTTSLFVSISHPPHLPRSLSVRVYGTR
CLSPKHQESLVAQVVRMLRLSETDERNAREFRKIAEAAAAEENNSWLTGFGGRVFRSPTLFEDMVKCILLCNCQWPRTLSMARALCELQCELQCKSSGVF
VAQAVNATVKNKCNDTAHNFIPNTSAGKESKRNIRASKVTKNLASKIVETETLLEADANLKTDSAHIGRETLESVENDSCARCSSRHGSDSCAPDSLQSQ
HGIQPGVNKMICNFPSPRELANLDESFLAKRCNLGYRAIRIIKLAQSIVEGRIPLREVEEDCANGASSSCYNKLADQFRQIDGFGPFTCANVLMCMGFYH
IIPTDSETVRHLKQLSIQVHAKKSTIQTVQRDVEEIYGKYAPFQFLAYWAELWHFYEKRFGKLSEIPTSDYKLITASNMRSKGGQKNKRTKRC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.003G046300
[exp]
0 1
AT2G32230 PRORP1 proteinaceous RNase P 1 (.1) Potri.017G144900
[exp]
3.31 0.7990
AT5G26800 unknown protein Potri.005G011800
[exp]
4.00 0.7920
Potri.011G126600
[exp]
5.74 0.7753
AT5G02130 NDP1 Tetratricopeptide repeat (TPR)... Potri.002G091400
[exp]
8.71 0.7065
AT1G60080 3'-5'-exoribonuclease family p... Potri.016G055600
[exp]
8.77 0.7613
AT5G46680 Pentatricopeptide repeat (PPR-... Potri.006G006500
[exp]
16.37 0.7731
AT4G38020 tRNA/rRNA methyltransferase (S... Potri.005G147600
[exp]
16.58 0.7451
AT1G09800 Pseudouridine synthase family ... Potri.003G008500
[exp]
17.97 0.7322
AT5G17230 PSY PHYTOENE SYNTHASE (.1.2.3) Potri.004G081466
[exp]
31.93 0.7615
AT5G06220 LETM1-like protein (.1.2) Potri.001G187100
[exp]
34.56 0.7685

Potri.003G046300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.