Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49760 865 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G79620 794 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G49770 773 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G49780 648 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G06840 387 / 4e-120 Leucine-rich repeat protein kinase family protein (.1) AT5G01950 380 / 3e-117 Leucine-rich repeat protein kinase family protein (.1) AT3G53590 320 / 9e-97 Leucine-rich repeat protein kinase family protein (.1) AT5G49750 288 / 7e-88 Leucine-rich repeat (LRR) family protein (.1) AT5G37450 280 / 8e-81 Leucine-rich repeat protein kinase family protein (.1) AT3G24550 250 / 5e-72 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G231700 [exp] 1196 / 0 AT5G49760 1031 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231850 [exp] 1181 / 0 AT5G49760 914 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232400 [exp] 1173 / 0 AT5G49760 1013 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231500 [exp] 941 / 0 AT5G49760 800 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232301 [exp] 915 / 0 AT5G49760 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231600 [exp] 899 / 0 AT5G49760 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231200 [exp] 897 / 0 AT5G49760 759 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G231300 [exp] 884 / 0 AT5G49760 719 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G232500 [exp] 841 / 0 AT5G49760 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012159 [exp] 1058 / 0 AT5G49760 1058 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007587 [exp] 948 / 0 AT5G49760 956 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021003 [exp] 422 / 6e-139 AT1G79620 549 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034445 [exp] 381 / 2e-117 AT1G06840 1274 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019114 [exp] 380 / 3e-117 AT1G06840 1288 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10003244 [exp] 375 / 2e-115 AT5G01950 1039 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10023848 [exp] 350 / 2e-112 AT1G79620 431 / 5e-143 Leucine-rich repeat protein kinase family protein (.1) Lus10035605 [exp] 363 / 2e-110 AT5G01950 1126 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004061 [exp] 341 / 4e-103 AT5G01950 766 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002278 [exp] 335 / 7e-101 AT5G37450 722 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.003G046450.2 pacid=42784940 polypeptide=Potri.003G046450.2.p locus=Potri.003G046450 ID=Potri.003G046450.2.v4.1 annot-version=v4.1 ATGGGTCCAAGAATTCTTGTATTTCTGGTTGTTGCTTTAAGTCAAGGATGTACCATACCAGCTATGACTGATGAGGCTGACTTTACTGCACTGAAAGCTC TCAAGGATATCTGGAAAAATGTACCACCTACTTGGGTGGGCGCTGATCCCTGCGGAAGTCGGTGGGAAGGCATTTTGTGCGCCAACTCACGTGTGACTTC CATAACATTGGCAAGCATGGGATTGAAAGGTTCACTATCTGGAGATATCCAATCCTTGTCAGAATTGCAGATTCTGGATTTATCCTACAACAAGGGCTTG AGCGGCCCTCTTCCTTCAGCAATTGGGGATTTGAAGAAGCTAACAAACTTAATACTGGTTGGTTGTAGTTTCTGGGGTCCGATCCCTGATTCAATAGGAT CTTTGCCACTACTTGCCTCTCTATCTCTGAATTCGAATGGCTTCACTGGATCTATTCCCTCTTCAATTGGGAATCTAACTAGCCTTTATTGGCTAGATCT TGCTGATAACAGGCTTACTGGGACCATCCCTGTCTCCACAGCGACTACACCTGGTCTTGACCTGCTAGTTCATACAAAACACTTTCATCTTGGATTGAAT CAGCTCTCAGGGACAATCCCTCCTAAGCTTTTTAGCTCAGAGATGAAACTCATACATGTACTTTTTGAAAGCAACAAGCTGACAGGCAGCATTCCTTCCA CCCTTGGCCTTGTGAAGACTTTGGAGGTTGTGCGCCTTGATAATAACTCGTTCAGAGGACCTGTCCCGTCAAACATCAATAGTCTTACCAGTGTCAGTAC GATGTTTTTATCCAACAATGATTTAACTGGGCCACTTCCCAACCTTACTGGCATGAATGCTCTCACCTATTTGGACATGAGAAACAATAGTTTCGATGAT ACAGAATTTCCTCCATGGCTTTCAACCTTGCAGTCTTTGAAAACATTACTTGCAGACAACCCAATATGTCAGGAAACAGCAGTGACAAAAAGTTACTGCA CCGTCTCCCAACCCAATTCTTCCTACGCGACGCCTCCAAATAACTGTGTGCCTGCATCCTGCTTTCCTAAACAGCATTCCAGTCCCAACTGTAAATGTGC ATTTCCATACACAGGACTTCTAGGGTTCAGAGCTCCTTCATTCTCAGACCTTGGAAACATCACTTACTTCAGTGTTCTCGAAAAATCTTTGATGAATTCA TTCAAGTCCCATCAATTTCCTGTGGATTCAGTTCATCTAAGTCAACCAAGAAAAGATCTATCTCAGTACCTTGATTTGAATCTGCAAGTGTTTCCATTTG GCCAAGATCGTTTCAATAGAACAGCAATTTTAAGTATTGGTTTTATGCTAAGCAACCAGACTTTCAAGCCTCCAGCGCAGTTCGGACCTTTCTTTTTTAT TGGTGATACGTATCTGCATTTCACAGGAGAAGTCAGAGGATCAAAAAAGTCATCAAGCACAGGTGCTATCATCGGAGCTGCGGCTGGTGGCTCTGTCCTT CTGTTGCTATTGCTTGGTGCTGGGCTTTATGCTTTTGGTCAAAAAATGAAAGCAGAAAAAGCAATTCAACAAAACAATCCTTTTGCACACTGGGAATCAA ACAATGGTGTTGGAGGTGTTCCTCAGTTAAAAGGAGCCAGATGCTTCTCTTTTGAAGAGATCAAAAAATACACCAACAACTTCTCAGAAACCAATGACAT TGGTTCTGGGGAGTATGGAAAGGTTTATAGAGGAGTTCTTCCTACTGGAGAACTAATTACCATCAAACGAGCTCTGCGAGAATGGATGCAGCCTGGGCTG GAATTCAAGACTGAGATTGAACTTTTATCCAGAGTCCACCACAGAAACGTTGTAAGCCTTGTAGGCTTTTGCCTTGAAAGAGGTGAACAAATGCTCATAT ACAAGTTTGTGTCAAATGGAAGTCTCATGGAAAGCCTATCAGGGAAGACAGGAATCAGGCTTGATTGGATGAGGAGACTCAAAGTGGCCCTTGGTGCAGC AAGAGGCTTGGCCTATCTGCACGAACTTGCCAACCCTCCCATTATCCATAGGCACATAAAATCAACCAACATATTATTAGATGAAAGCTTAAATGCAAAA GTTGCCGATTTTGGCCTCTCCAAGCTTATGGGAGACAGTGAAAAGGGTCGTGTTACCACTCAGGGTTATTTGGATCCAGAATACTACATGACCCTGCAGC TAACAGAGAAGAGTGATGTTTATAGCTTTGGAGTTGTAATGCTGGAACTATTAACCGGAAGAAGGCCAGTAGAACGAGGAAAGTACGTTGTGAGAGAGGT AAAGATGGCATTGGATAGAGCAAAAGATTTATATAACCTCCGCGAACTTCTCGACCCAAGCATTGGTTTGGACACAACATTAAAAGGTCTAGATAAGTTT GTGGATGTTGCCCTAAAATGTGTACAAGAGAATGGAAGTGACAGGCCAACAATGGGTGAAGTGGTGAACGAGATAGAGAATATCTTGCAGCTTGCTGGTC TGAACCCCAACGCGGATTCAGCATCGACGTCGGCAAGTTATGACGATGTAAGCAAGGGAAGTGCTAAACATCCATACAAGAATAGCAAGGATTCCTTTGA ATACAGTGAGGGCTTTCCAGATCCGAAGGTAGAGCCACTGTGA
AA sequence Show only first row Show all	>Potri.003G046450.2 pacid=42784940 polypeptide=Potri.003G046450.2.p locus=Potri.003G046450 ID=Potri.003G046450.2.v4.1 annot-version=v4.1 MGPRILVFLVVALSQGCTIPAMTDEADFTALKALKDIWKNVPPTWVGADPCGSRWEGILCANSRVTSITLASMGLKGSLSGDIQSLSELQILDLSYNKGL SGPLPSAIGDLKKLTNLILVGCSFWGPIPDSIGSLPLLASLSLNSNGFTGSIPSSIGNLTSLYWLDLADNRLTGTIPVSTATTPGLDLLVHTKHFHLGLN QLSGTIPPKLFSSEMKLIHVLFESNKLTGSIPSTLGLVKTLEVVRLDNNSFRGPVPSNINSLTSVSTMFLSNNDLTGPLPNLTGMNALTYLDMRNNSFDD TEFPPWLSTLQSLKTLLADNPICQETAVTKSYCTVSQPNSSYATPPNNCVPASCFPKQHSSPNCKCAFPYTGLLGFRAPSFSDLGNITYFSVLEKSLMNS FKSHQFPVDSVHLSQPRKDLSQYLDLNLQVFPFGQDRFNRTAILSIGFMLSNQTFKPPAQFGPFFFIGDTYLHFTGEVRGSKKSSSTGAIIGAAAGGSVL LLLLLGAGLYAFGQKMKAEKAIQQNNPFAHWESNNGVGGVPQLKGARCFSFEEIKKYTNNFSETNDIGSGEYGKVYRGVLPTGELITIKRALREWMQPGL EFKTEIELLSRVHHRNVVSLVGFCLERGEQMLIYKFVSNGSLMESLSGKTGIRLDWMRRLKVALGAARGLAYLHELANPPIIHRHIKSTNILLDESLNAK VADFGLSKLMGDSEKGRVTTQGYLDPEYYMTLQLTEKSDVYSFGVVMLELLTGRRPVERGKYVVREVKMALDRAKDLYNLRELLDPSIGLDTTLKGLDKF VDVALKCVQENGSDRPTMGEVVNEIENILQLAGLNPNADSASTSASYDDVSKGSAKHPYKNSKDSFEYSEGFPDPKVEPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49760			Leucine-rich repeat protein ki...		Potri.003G046450 [exp]	0	1
AT3G45740			hydrolase family protein / HAD...		Potri.010G216000 [exp]	1.41	0.9017
AT3G03770			Leucine-rich repeat protein ki...		Potri.019G039000 [exp]	2.64	0.8703
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Potri.002G230200 [exp]	2.64	0.9059
					Potri.017G095500 [exp]	4.47	0.8884
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Potri.014G152000 [exp]	4.89	0.9014
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Potri.002G229900 [exp]	6.92	0.8540	GLR3.3
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Potri.007G008500 [exp]	7.48	0.8982	XTH2.2
AT2G18300	bHLH	bHLH064, HBI1	basic helix-loop-helix (bHLH) ...		Potri.007G023600 [exp]	9.48	0.8713
AT3G59780			Rhodanese/Cell cycle control p...		Potri.019G098001 [exp]	12.72	0.8184
AT4G27290			S-locus lectin protein kinase ...		Potri.011G128700 [exp]	15.19	0.8264

Compare expression of checked genes

Potri.003G046450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.