Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02450 319 / 1e-106 NAC LOV1, ANAC034, ANAC035 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) AT2G17040 192 / 9e-59 NAC ANAC036 NAC domain containing protein 36 (.1) AT5G39820 192 / 1e-57 NAC ANAC094 NAC domain containing protein 94 (.1) AT4G27410 187 / 2e-56 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT1G26870 188 / 2e-55 NAC FEZ, ANAC009 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G15500 183 / 1e-54 NAC ATNAC3, ANAC055 NAC domain containing protein 55, NAC domain containing protein 3 (.1) AT1G52890 182 / 3e-54 NAC ANAC019 NAC domain containing protein 19 (.1) AT1G61110 182 / 3e-54 NAC ANAC025 NAC domain containing protein 25 (.1) AT2G43000 179 / 2e-53 NAC ANAC042, JUB1, JUNGBRUNNEN1 NAC domain containing protein 42 (.1) AT1G01720 178 / 6e-53 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230800 [exp] 488 / 1e-172 AT2G02450 311 / 2e-103 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Potri.009G141600 [exp] 190 / 1e-57 AT2G17040 314 / 6e-108 NAC domain containing protein 36 (.1) Potri.011G123300 [exp] 187 / 8e-56 AT4G27410 354 / 2e-122 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.001G404100 [exp] 187 / 1e-55 AT4G27410 370 / 8e-129 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.019G031400 [exp] 185 / 1e-54 AT3G04070 332 / 1e-112 NAC domain containing protein 47 (.1.2) Potri.017G082000 [exp] 184 / 3e-54 AT1G26870 299 / 3e-98 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.005G069500 [exp] 179 / 3e-53 AT1G01720 357 / 3e-124 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.011G046700 [exp] 180 / 6e-53 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1) Potri.007G099400 [exp] 178 / 6e-53 AT1G01720 366 / 6e-128 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008419 [exp] 327 / 1e-108 AT2G02450 327 / 7e-109 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10003367 [exp] 327 / 2e-107 AT2G02450 333 / 3e-110 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10023208 [exp] 312 / 1e-104 AT2G02450 321 / 3e-108 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10008897 [exp] 310 / 1e-103 AT2G02450 315 / 5e-106 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10008420 [exp] 311 / 2e-103 AT2G02450 320 / 2e-106 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10015367 [exp] 192 / 1e-57 AT1G26870 298 / 8e-99 FEZ, Arabidopsis NAC domain containing protein 9, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10022636 [exp] 189 / 5e-57 AT2G17040 287 / 6e-97 NAC domain containing protein 36 (.1) Lus10007263 [exp] 187 / 8e-56 AT5G39820 300 / 3e-100 NAC domain containing protein 94 (.1) Lus10030478 [exp] 189 / 2e-55 AT5G39820 297 / 4e-98 NAC domain containing protein 94 (.1) Lus10003333 [exp] 185 / 2e-55 AT2G17040 293 / 2e-99 NAC domain containing protein 36 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.003G046700.1 pacid=42786283 polypeptide=Potri.003G046700.1.p locus=Potri.003G046700 ID=Potri.003G046700.1.v4.1 annot-version=v4.1 ATGGCAATTGCAGCAACCATGAGCCACAACACAAACAACGAGCAAAACAACAACAATAACGATTGCAACAGCAACAGCAACAACAAAGATGATGACCATG AGCATGACATGGTTATGCCAGGATTTCGTTTCCATCCAACTGAAGAAGAACTTGTCGAGTTCTACCTTCGCCGTAAGGTTGAGGGCAAACGCTTCAATGT GGAACTCATCACTTTCTTAGATCTTTATCGCTATGATCCTTGGGAACTTCCTGCTTTAGCAGCTATTGGAGAGAAAGAATGGTTCTTCTATGTCCCTAGA GACAGGAAATATCGAAACGGGGATCGACCCAATCGTGTGACTACTTCTGGCTACTGGAAGGCAACAGGAGCTGACCGGATGATCCGAACTGAGAATTCAA GATCAATTGGTTTAAAGAAAACCCTAGTTTTCTACTCCGGGAAAGCTCCTAAAGGAATCCGAACTAGTTGGATCATGAATGAATACCGGTTGCCACACCA TGAAACTGAACGATACCAAAAGGTTGAAATATCACTTTGCCGCGTCTACAAGAGAGCTGGAGTAGAAGATCATCCATCCCTCCCTCGTTCACTTCCATCA CGGGCATCCTCATCGAGGGGGCCTCAATCTGACAAGAAACACCAAAGTCATCTCACGTTGGAAAGATTTCAACCTTTTGTAGGACAATCATCGCAACAAA TTGAAATGGAAAAGATGAGTGAAACAGATGCAAGCAGCAGCTCAGATGTCACAACTGCTCTTGGACTCTCCAAGCATAACAGTAACGCATACCATCCAAC CCCTCCAATTAGCAACTCACTTGGACTTCCAGCTTCAGTAGGAGAAGGAATGTTTCTAAACCTGCCCAAGCAAGCTTCCAGCTCTTTAATCCCTAGCTTC ACTAATCTATTCTCTGTTACATCCTCCGTATCGTCGAGTCCAGTAGATGATCTGCATAGACTACTTAACTACCAACAAGCTAGCATTAATCATCATCATC ATCATCAGCAGCAGCAGCAGCAACAATTTTATCTTCTTCAACAACCACAACACCAATCCTCACAGCTTTCTAGTATGACACCACAAACATCGCAGCAGCT GCCTCTCAACATGCTACCAGAATTGCTACCACCCACCTTTCCAGACAGACTATGGGAGTGGAATCAAATGCCAGAAGCAAATAGAGACTTCAATAACCCA TTCAAGTAA
AA sequence Show only first row Show all	>Potri.003G046700.1 pacid=42786283 polypeptide=Potri.003G046700.1.p locus=Potri.003G046700 ID=Potri.003G046700.1.v4.1 annot-version=v4.1 MAIAATMSHNTNNEQNNNNNDCNSNSNNKDDDHEHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWFFYVPR DRKYRNGDRPNRVTTSGYWKATGADRMIRTENSRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPHHETERYQKVEISLCRVYKRAGVEDHPSLPRSLPS RASSSRGPQSDKKHQSHLTLERFQPFVGQSSQQIEMEKMSETDASSSSDVTTALGLSKHNSNAYHPTPPISNSLGLPASVGEGMFLNLPKQASSSLIPSF TNLFSVTSSVSSSPVDDLHRLLNYQQASINHHHHHQQQQQQQFYLLQQPQHQSSQLSSMTPQTSQQLPLNMLPELLPPTFPDRLWEWNQMPEANRDFNNP FK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Potri.003G046700 [exp]	0	1
					Potri.017G111225 [exp]	1.00	0.9809
AT5G38260			Protein kinase superfamily pro...		Potri.015G045200 [exp]	2.82	0.9672
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Potri.002G161600 [exp]	3.00	0.9500
AT5G38260			Protein kinase superfamily pro...		Potri.015G044875 [exp]	4.24	0.9585
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Potri.003G131300 [exp]	5.65	0.9608
AT3G02730		TRXF1, ATF1	thioredoxin F-type 1 (.1)		Potri.019G054800 [exp]	7.74	0.9652	PtrcTrxf
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Potri.003G059700 [exp]	10.81	0.9437
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Potri.003G151000 [exp]	11.40	0.9349
					Potri.012G120584 [exp]	12.00	0.9354
AT1G07650			Leucine-rich repeat transmembr...		Potri.004G063900 [exp]	14.49	0.9517

Compare expression of checked genes

Potri.003G046700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.