Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52080 349 / 1e-112 AR791 actin binding protein family (.1) AT3G25690 204 / 1e-55 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G191300 [exp] 956 / 0 AT1G52080 349 / 3e-112 actin binding protein family (.1) Potri.010G130800 [exp] 200 / 3e-54 AT3G25690 1030 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.005G098400 [exp] 77 / 1e-14 AT2G36650 142 / 4e-38 unknown protein Potri.001G460300 [exp] 67 / 2e-11 AT3G25690 345 / 3e-106 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.011G156500 [exp] 66 / 8e-11 AT3G25690 338 / 2e-103 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025846 [exp] 517 / 6e-177 AT1G52080 337 / 4e-108 actin binding protein family (.1) Lus10038254 [exp] 505 / 3e-172 AT1G52080 333 / 2e-106 actin binding protein family (.1) Lus10034382 [exp] 197 / 4e-53 AT3G25690 1221 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10034264 [exp] 197 / 4e-53 AT3G25690 1230 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G047200.3 pacid=42786670 polypeptide=Potri.003G047200.3.p locus=Potri.003G047200 ID=Potri.003G047200.3.v4.1 annot-version=v4.1 ATGGTAAGAGATAAAAGAGATATAAGTCCCGTTTTACTCAAATTTGGGGCAGCTTTAGCTGTCTCTATTGCTGGATTTCTCCTTTCACGCTTGAAAACCA ACAGGAATAAATCTTCCCAGCCTCCTCACTCCCCACGCTCTTCAGATCATAGTACTGAAGTTGATGTAGGAAGGGAAAGATCTTGGGGCAGAGATGATCT TCAAGTGACTAACAGAACATCCAGTTCTGGCAGTTTGACTTCAATTTCAACAGAAATACATGAAGACTCGTACATGCTCAAGGTTGCTGTTGATAATTCA AAGGTTTTTTATCCAAGCAGTAGACAGAGTGGGGATAAAGATGGGTACCTCTTACCCGAATTCAATGATTTCATGAAGGAATTTGACTTTAATGTTCATA ATTCTGGGACGTCTCCTAGCAAAGATGAAACACCAAGGTCAGATGTGGAAACTCCAAGATCATTCAAAGGTGCGGAAAAGGTCAATTATGAGCAAGAGAT AAAACATCTGAAGAACATGGTTAAAATGCTTCGAGAAAGGGAAAGGAACCTTGAGGTCCAAATGCTTGAGTTTTATGGTCATAAAGAGCAAGAAACAGCT GTGATGGAGTTGCAAAACCGTTTGAAAATAAACAACATGGAGGCTAAGTTATTTGGTCTGAAAATTGAATCCCTACGGGCTGATAACAGAAGACTGCATG ATCAAGTGGCTGATCATGTGAAAGTTGTTACTGAGCTTAATGCTGCCAGAACAAAACTTAAACTGCTGAAGAAAAAACTAAGGTCTGAAGCAGAGCAGAA CAGAGAACAGATATTGTCCCTTCAAAACATAGTTTCTAGGTTGCAAGAGCAGGAACTCAAGTCTGCTGCAACTGATTCAGATATTAAAATGAAGTTGCAA AGGCTGAAGGATTTGGAAACAGAGACAGAAGAGTTAAAGAAGTCTTACTTGAGATTGCATCTAGAAAATTCTGAATTGGCCTCTCAACTGGAGTCCACCA AAATCCTAGCAAATTCCATTCTTGAGGATCCAGAGACAGAAACATTAAGGAAGCTGGGCAATCAGTTGAGGCAGGAAAATGAGGACTTGGTGAAGGAAGT TGAGAGACTTCAAGCTGACCGGTGCACTGATGTTGAAGAATTAGTCTACCTCCGCTGGATAAATGCTTGCTTGCGATATGAATTGCGCAATTTTCAGCCC CCATATGGTAAAACTGTTGCAAGAGACCTTAGTAAGTCTCTAAGCCCCAGGTCTGAGGAGAAAGCAAAACAGCTCATACTTGAATATGCAAATACTAAAG GGATGATGGAGAAGGGGATCAACATTATGGAGTTTGAACCTGATCACTGGTCATCCTCCCAAGCCTCATATATGACAGACCTGGGAGAACTTGATGATTC TCTATCACCAAAAACAAACCACTCAGGCAAAACCAAAATTTTCCACAAGCTTAGGAGACTTTTATTGGGAAAGGAGACTCATAATCAGAGTCATGGATCA TCAGGCAGCAGAACTGGAGCGACAGGAGACTCTGATTCTCCAAATGGAAGTTTAAGTGTTTCAACACCAACTGACAACACAAGTGATCTGCAATCTACTA GAGGTCAAACTCCATCCTTCTATTCATCTAGACATTCTGTGGATACCCAAAGAACCAGGAGTTTGGAGAACAGTAGGAGAAATAGTGAGGCCGGATCCTC TCATTGGTATAGGAGATTTTCATCAAGTAGAGCTAGCGATTTGTCACTTGAAAATTTACTGGATCAAGACTTGTATTCTATAGAGAAATCCGAGTTGGTG AAATTCGCTGAAGTTCTGAAGGACCCTGGAAGTAGAGCCGGAAATGGCAATAGGATGAATAAGTTGCACAGAAAATCAGTATCAGTGGGCTCATTTGAGG CTCTTCATGGCTCTTCAGAATAA
AA sequence Show only first row Show all	>Potri.003G047200.3 pacid=42786670 polypeptide=Potri.003G047200.3.p locus=Potri.003G047200 ID=Potri.003G047200.3.v4.1 annot-version=v4.1 MVRDKRDISPVLLKFGAALAVSIAGFLLSRLKTNRNKSSQPPHSPRSSDHSTEVDVGRERSWGRDDLQVTNRTSSSGSLTSISTEIHEDSYMLKVAVDNS KVFYPSSRQSGDKDGYLLPEFNDFMKEFDFNVHNSGTSPSKDETPRSDVETPRSFKGAEKVNYEQEIKHLKNMVKMLRERERNLEVQMLEFYGHKEQETA VMELQNRLKINNMEAKLFGLKIESLRADNRRLHDQVADHVKVVTELNAARTKLKLLKKKLRSEAEQNREQILSLQNIVSRLQEQELKSAATDSDIKMKLQ RLKDLETETEELKKSYLRLHLENSELASQLESTKILANSILEDPETETLRKLGNQLRQENEDLVKEVERLQADRCTDVEELVYLRWINACLRYELRNFQP PYGKTVARDLSKSLSPRSEEKAKQLILEYANTKGMMEKGINIMEFEPDHWSSSQASYMTDLGELDDSLSPKTNHSGKTKIFHKLRRLLLGKETHNQSHGS SGSRTGATGDSDSPNGSLSVSTPTDNTSDLQSTRGQTPSFYSSRHSVDTQRTRSLENSRRNSEAGSSHWYRRFSSSRASDLSLENLLDQDLYSIEKSELV KFAEVLKDPGSRAGNGNRMNKLHRKSVSVGSFEALHGSSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52080		AR791	actin binding protein family (...		Potri.003G047200 [exp]	0	1
AT4G20325			unknown protein		Potri.006G280600 [exp]	1.00	0.9619
AT2G32600			hydroxyproline-rich glycoprote...		Potri.016G097600 [exp]	2.23	0.9077
AT3G14470			NB-ARC domain-containing disea...		Potri.019G036850 [exp]	3.46	0.9080
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.017G078500 [exp]	3.46	0.9147	HMGB906,ATHMG.1
AT4G01810			Sec23/Sec24 protein transport ...		Potri.002G187100 [exp]	4.24	0.9102
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Potri.010G122500 [exp]	4.79	0.8699
					Potri.002G146750 [exp]	5.47	0.8877
AT1G79870			D-isomer specific 2-hydroxyaci...		Potri.013G046150 [exp]	5.65	0.8951
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.009G170100 [exp]	6.24	0.8835
AT5G17900			microfibrillar-associated prot...		Potri.013G065600 [exp]	7.00	0.8962

Compare expression of checked genes

Potri.003G047200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.