Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16490 300 / 5e-99 IQD26 IQ-domain 26 (.1) AT1G51960 164 / 8e-47 IQD27 IQ-domain 27 (.1) AT4G29150 149 / 6e-41 IQD25 IQ-domain 25 (.1) AT4G14750 90 / 2e-19 IQD19 IQ-domain 19 (.1) AT5G62070 61 / 7e-10 IQD23 IQ-domain 23 (.1) AT5G07240 52 / 3e-07 IQD24 IQ-domain 24 (.1) AT1G01110 52 / 4e-07 IQD18 IQ-domain 18 (.1.2) AT4G00820 52 / 7e-07 IQD17 IQ-domain 17 (.1) AT4G23060 50 / 1e-06 IQD22 IQ-domain 22 (.1) AT1G17480 47 / 2e-05 IQD7 IQ-domain 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190500 [exp] 630 / 0 AT3G16490 293 / 5e-96 IQ-domain 26 (.1) Potri.008G156700 [exp] 117 / 1e-28 AT4G14750 307 / 6e-101 IQ-domain 19 (.1) Potri.010G082600 [exp] 110 / 1e-26 AT4G14750 261 / 2e-83 IQ-domain 19 (.1) Potri.012G139800 [exp] 78 / 2e-15 AT5G07240 137 / 3e-36 IQ-domain 24 (.1) Potri.015G142200 [exp] 74 / 4e-14 AT5G07240 138 / 3e-36 IQ-domain 24 (.1) Potri.001G108800 [exp] 74 / 4e-14 AT4G23060 179 / 1e-50 IQ-domain 22 (.1) Potri.005G051500 [exp] 67 / 7e-12 AT4G14750 127 / 6e-33 IQ-domain 19 (.1) Potri.003G122800 [exp] 63 / 2e-10 AT4G23060 109 / 1e-25 IQ-domain 22 (.1) Potri.014G104600 [exp] 52 / 4e-07 AT4G00820 432 / 2e-146 IQ-domain 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011131 [exp] 223 / 5e-68 AT3G16490 223 / 2e-68 IQ-domain 26 (.1) Lus10021904 [exp] 93 / 3e-20 AT4G14750 314 / 2e-103 IQ-domain 19 (.1) Lus10006613 [exp] 74 / 6e-14 AT4G14750 295 / 6e-96 IQ-domain 19 (.1) Lus10041188 [exp] 65 / 5e-11 AT4G14750 288 / 2e-93 IQ-domain 19 (.1) Lus10017841 [exp] 55 / 6e-08 AT4G23060 258 / 2e-80 IQ-domain 22 (.1) Lus10014870 [exp] 50 / 2e-06 AT2G26180 249 / 5e-74 IQ-domain 6 (.1) Lus10010104 [exp] 50 / 2e-06 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2) Lus10005760 [exp] 50 / 3e-06 AT5G07240 219 / 3e-67 IQ-domain 24 (.1) Lus10012608 [exp] 49 / 4e-06 AT1G01110 432 / 8e-147 IQ-domain 18 (.1.2) Lus10027435 [exp] 48 / 1e-05 AT5G62070 207 / 3e-62 IQ-domain 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0220 [poplar] [flax] PF13178 [poplar] [flax] DUF4005 Protein of unknown function (DUF4005)
Representative CDS sequence Show only first row Show all	>Potri.003G047800.1 pacid=42786480 polypeptide=Potri.003G047800.1.p locus=Potri.003G047800 ID=Potri.003G047800.1.v4.1 annot-version=v4.1 ATGGGCAGAGCTACAAGGTGGCTAAAGGGCTTATTGGGCATGAAGAAAGACAGAGATAAAGAAAGAGACGATGTTGCCACACCAATTTCAAGTGACAAGA AAGAGAAGAAAAGGTGGAGCTTTTCCAAATCAGGGAAGGATGACGCTCCAGCGACTCTTTCAGGGAACATGAAAGATGCTGCCTGGCTCAGTTCCTACCT TTCTGAGACGGAAAGAGAGCAGAACAAGCATGCAATTGCAGTGGCAGCAGCCACAGCTGCAGCAGCTGATGCTGCAGTGGCTGCAGCTCAGGCAGCGGTT GCCGTCGTGAGGCTCACCAGCCATGGCAGAGGCACAATGTTGGGTGGAGGGAAGGAGAAATGGGCTGCAGTAAAAATTCAAACTGTCTTTAGAGGCTACT TGGCCCGAAAAGCTCTTCGCGCATTGAAAGGGCTGGTTAAGCTACAAGCTGTTGTTAGGGGCTATTTAGTCCGAAAACGGGCTGCTGCAACTCTTCATAG TATGCAAGCTCTCATAAGAGCTCAAAATTCTGTTCTGTCTCAACATGCTCGTCGTTGGTTGAACAAAGAGATTAGATTTTCTGAACACAGGCCACGAAAA TCCTTGGAGAGGTTTGATGATATGAGAAGTGAATTTCACAGCAAGAGGCTATCCACATCTTATGACACGACTGTATTTGATGAAAGCCCTAAGATAGTTG AAATTGACACCTACAAGCCAAGATCAAGATCTCGTAGGATTAATATTGCACTATCAGAATGTGGTGAAGAACTTCCCTACCAGGCTATCTCGTCACCTCT TCCTTGTCCTACACCAGCTAGAATCTCCATCCCTGAGTGCAAACATTATCAAGATCTTGAGTGGTACTTCACTGGCGAGGAATGTAGGTTCTCCACTGCA CACAGTACTCCAAGATTTGCAAACTCTGCCCGGTGCAATGCCCCTGCCACACCGGCAAGGAGCATTTGCGGAGATGCCTACTTTAAGCCTTATTCGAACT TCCACAATTACATGGCAAACACGCAATCCTTTAAGGCCAAATTGAGGTCTCATAGTGCGCCAAAACAAAGGCCGGATCCAGGATCAAAGAAGAGGCTTCC ACTCAATGAAATAATGGCTTCCAGAAATAGCATAAGCGGCGTCAGAATGCAGCGGTCATGCACCAAAGTTGATGAAGATTTGGTCATCGAGGAATTGGTT AGTGAAGAGGGGCGTTCTTATCCGAAGTGA
AA sequence Show only first row Show all	>Potri.003G047800.1 pacid=42786480 polypeptide=Potri.003G047800.1.p locus=Potri.003G047800 ID=Potri.003G047800.1.v4.1 annot-version=v4.1 MGRATRWLKGLLGMKKDRDKERDDVATPISSDKKEKKRWSFSKSGKDDAPATLSGNMKDAAWLSSYLSETEREQNKHAIAVAAATAAAADAAVAAAQAAV AVVRLTSHGRGTMLGGGKEKWAAVKIQTVFRGYLARKALRALKGLVKLQAVVRGYLVRKRAAATLHSMQALIRAQNSVLSQHARRWLNKEIRFSEHRPRK SLERFDDMRSEFHSKRLSTSYDTTVFDESPKIVEIDTYKPRSRSRRINIALSECGEELPYQAISSPLPCPTPARISIPECKHYQDLEWYFTGEECRFSTA HSTPRFANSARCNAPATPARSICGDAYFKPYSNFHNYMANTQSFKAKLRSHSAPKQRPDPGSKKRLPLNEIMASRNSISGVRMQRSCTKVDEDLVIEELV SEEGRSYPK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16490		IQD26	IQ-domain 26 (.1)		Potri.003G047800 [exp]	0	1
AT5G58480			O-Glycosyl hydrolases family 1...		Potri.009G076500 [exp]	11.40	0.8859
AT3G27090			DCD (Development and Cell Deat...		Potri.019G066100 [exp]	11.66	0.8874
AT3G17350			unknown protein		Potri.010G152900 [exp]	17.60	0.8753
AT3G57040		ATRR4, ARR9	RESPONSE REGULATOR 4, response...		Potri.002G082200 [exp]	19.41	0.8527
AT3G42725			Putative membrane lipoprotein ...		Potri.018G065700 [exp]	23.23	0.8856
AT1G80690			PPPDE putative thiol peptidase...		Potri.003G180400 [exp]	25.84	0.8764
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.001G043600 [exp]	26.73	0.8690
AT1G72160			Sec14p-like phosphatidylinosit...		Potri.004G138200 [exp]	29.12	0.8629
AT1G21510			unknown protein		Potri.002G076200 [exp]	31.30	0.8725
AT1G23790			Plant protein of unknown funct...		Potri.010G038600 [exp]	36.24	0.8734

Compare expression of checked genes

Potri.003G047800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.