Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33490 259 / 3e-89 unknown protein AT4G10140 241 / 4e-82 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G095200 [exp] 313 / 2e-110 AT1G33490 260 / 5e-90 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039157 [exp] 263 / 1e-90 AT1G33490 244 / 1e-83 unknown protein Lus10013777 [exp] 235 / 1e-76 AT1G71340 267 / 7e-87 glycerophosphodiester phosphodiesterase 4, PLC-like phosphodiesterases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09835 [poplar] [flax] DUF2062 Uncharacterized protein conserved in bacteria (DUF2062)
Representative CDS sequence Show only first row Show all	>Potri.003G048300.3 pacid=42785384 polypeptide=Potri.003G048300.3.p locus=Potri.003G048300 ID=Potri.003G048300.3.v4.1 annot-version=v4.1 ATGGCGATGCCGGCGATGGGATTTCTGGCTTGGCTTGACAAGAAGATCGTGGATCCTCTCTATCAAATCCTTCGCAGGGGTTTAGAGCCGAAGCAATTGG CTTTCTCAACGGCACTTGGTATTGCTCTCGGAATATTTCCTATATGCGGTGTTACCGTTCTGCTTTGTGGACTGGCTATTGCGTTGCTTGGATCTCTTTG CCATGCTCCCACCGTGCTGTTAGCTAACTTCATCGCTACTCCCATAGAGCTAAGTTTGGTGGTGCCCTTCTTGCGCTTTGGCGAAGTTATGTCTGGTGGA CCTCCTTTTCCTTTGACATCCGATGCATTGAAAAAGGTTTTGACAGGACAAGCTTCGCGTGAAGTTATATTAAGTATTGCCCATGCTCTGTTGGGATGGC TAGTAGCAGCACCCTTTATTTTGGCCGCACTCTACATAATATTTTTGCCATGTTTCAAGGTCTTGGTTCACAAGTTCAGCACTGTTCCATCAAGCCCAAA GAAACCATCAAATTCACTCGCAGAAATCAAGCTTAAGTGTTGTGAAGAATGGAGTAGTGCGAGTGGTAGAACCATATAA
AA sequence Show only first row Show all	>Potri.003G048300.3 pacid=42785384 polypeptide=Potri.003G048300.3.p locus=Potri.003G048300 ID=Potri.003G048300.3.v4.1 annot-version=v4.1 MAMPAMGFLAWLDKKIVDPLYQILRRGLEPKQLAFSTALGIALGIFPICGVTVLLCGLAIALLGSLCHAPTVLLANFIATPIELSLVVPFLRFGEVMSGG PPFPLTSDALKKVLTGQASREVILSIAHALLGWLVAAPFILAALYIIFLPCFKVLVHKFSTVPSSPKKPSNSLAEIKLKCCEEWSSASGRTI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33490			unknown protein		Potri.003G048300 [exp]	0	1
AT3G21175	GATA	GATA24, TIFY2B,...	ZIM LIKE 1, GATA TRANSCRIPTION...		Potri.007G116700 [exp]	2.23	0.6911
AT4G34630			unknown protein		Potri.004G160700 [exp]	6.48	0.6737
AT3G16210			F-box family protein (.1)		Potri.012G099733 [exp]	8.88	0.7176
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Potri.011G132400 [exp]	15.00	0.7016
AT4G16530			Family of unknown function (DU...		Potri.001G123200 [exp]	32.49	0.6661
AT2G44140			Peptidase family C54 protein (...		Potri.017G000500 [exp]	36.41	0.5671
AT4G20960			Cytidine/deoxycytidylate deami...		Potri.014G083000 [exp]	39.11	0.5559
ATCG00140		ATCG00140.1, AT...	ATP synthase subunit C family ...		Potri.013G138490 [exp]	47.94	0.6503
AT1G15230			unknown protein		Potri.003G053500 [exp]	52.05	0.6519
AT4G25670			unknown protein		Potri.004G079900 [exp]	60.31	0.6221

Compare expression of checked genes

Potri.003G048300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.