Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10170 254 / 1e-84 SNARE-like superfamily protein (.1.2) AT1G33475 207 / 3e-66 SNARE-like superfamily protein (.1) AT5G52990 74 / 2e-15 SNARE-like superfamily protein (.1) AT4G27840 62 / 6e-11 SNARE-like superfamily protein (.1) AT1G04750 49 / 8e-07 ATVAMP7B, ATVAMP721, VAMP7B VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) AT4G15780 49 / 1e-06 ATVAMP724 vesicle-associated membrane protein 724 (.1) AT2G32670 49 / 1e-06 ATVAMP725 vesicle-associated membrane protein 725 (.1) AT1G04760 48 / 1e-06 ATVAMP726 vesicle-associated membrane protein 726 (.1) AT3G54300 48 / 2e-06 ATVAMP727 vesicle-associated membrane protein 727 (.1.2) AT2G33120 47 / 5e-06 ATVAMP722, SAR1 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G094900 [exp] 468 / 9e-169 AT4G10170 270 / 3e-91 SNARE-like superfamily protein (.1.2) Potri.015G012300 [exp] 87 / 7e-20 AT5G52990 192 / 3e-60 SNARE-like superfamily protein (.1) Potri.012G016400 [exp] 85 / 2e-19 AT5G52990 200 / 2e-63 SNARE-like superfamily protein (.1) Potri.008G019400 [exp] 54 / 3e-08 AT3G54300 407 / 3e-146 vesicle-associated membrane protein 727 (.1.2) Potri.010G239900 [exp] 52 / 8e-08 AT3G54300 387 / 6e-138 vesicle-associated membrane protein 727 (.1.2) Potri.001G050400 [exp] 49 / 6e-07 AT2G33120 365 / 4e-130 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.003G177700 [exp] 49 / 6e-07 AT1G04750 389 / 1e-139 VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) Potri.008G209100 [exp] 48 / 2e-06 AT4G15780 367 / 9e-131 vesicle-associated membrane protein 724 (.1) Potri.012G119600 [exp] 44 / 3e-05 AT2G33120 363 / 2e-129 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002944 [exp] 271 / 2e-91 AT4G10170 247 / 2e-82 SNARE-like superfamily protein (.1.2) Lus10003523 [exp] 224 / 3e-69 AT1G11840 495 / 5e-174 glyoxalase I homolog (.1.2.3.4.5.6) Lus10022397 [exp] 86 / 2e-19 AT5G52990 189 / 3e-59 SNARE-like superfamily protein (.1) Lus10000754 [exp] 53 / 5e-08 AT1G04760 372 / 8e-133 vesicle-associated membrane protein 726 (.1) Lus10011737 [exp] 48 / 1e-06 AT1G04760 324 / 4e-114 vesicle-associated membrane protein 726 (.1) Lus10043431 [exp] 49 / 2e-06 AT3G54300 325 / 9e-111 vesicle-associated membrane protein 727 (.1.2) Lus10034145 [exp] 48 / 4e-06 AT3G54300 322 / 4e-109 vesicle-associated membrane protein 727 (.1.2) Lus10018296 [exp] 47 / 4e-06 AT1G04760 366 / 2e-130 vesicle-associated membrane protein 726 (.1) Lus10040611 [exp] 47 / 6e-06 AT1G04760 369 / 1e-131 vesicle-associated membrane protein 726 (.1) Lus10022804 [exp] 47 / 7e-06 AT1G04760 377 / 1e-134 vesicle-associated membrane protein 726 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G048600.1 pacid=42786058 polypeptide=Potri.003G048600.1.p locus=Potri.003G048600 ID=Potri.003G048600.1.v4.1 annot-version=v4.1 ATGAGTTCAATGCACAGTACTGTCCATTACTGCTGTGTTGCAAGGGGTAATCGCACCTTGTATGTGTATAGTAGGGGAGACCATGAGATTGAGAATTCGG CAGCATTGTGCTTGGAAAGCACTCCCTCTTACCACAAGTGGTATTTTGAGACGATTGCTGAAAAAACCTTTGGGTTTTTGATAGAAGATGGTTCTGTTTA TTTTACAATTGTTGATGAGGGTCTTGGACACCCGAGTGTACTTCAATTTCTAGAGCATGTAAGAGATGAATTCAAAAAGGTTGCTAGAAAAGGTTCTAGA GGAGGTTTTTCTGGTATGAACTCGATCAATGTACAAGAACAATTAGTGCCTGTTATTTGTAGCTTGATAACTTCATTGGAGCATGTTGTTTGCAATGATG GGGCCGGTGAGAGTTCCTCATCTGATAATGTAGGCCTCTCTCCATCACCTCTTAATGCAAATGAACAAATTGAAGTTGTCAATTCTACCAAAGCTCCTTT GTTAGGTAAATCAAATAAGCAAGATAAAAGGAAGTCAAAGGATCATGTTATTACAATAAGAGATATTGAGTTAGAAGAGCATAGAAATTCTACTGATAGA GGGGCTAAGCTTGATTCAGCTACTTTGGATTCCAATAATCAAGGTGGAGTAGGTTCTTCAATATCGCTACAAAAGGATTTGGGTTCAATGAGGATTAGAT CAAGCTCTCAAAGCATTCGAAAGAAGTGGTGGCGCCAAGTAAGGATTGTTCTAGCTATTGATGTGGCTATATGTTTGATTCTATTTTTAACTTGGCTATC AATTTGTGGTGGTTTCGGATGTACTCATTGA
AA sequence Show only first row Show all	>Potri.003G048600.1 pacid=42786058 polypeptide=Potri.003G048600.1.p locus=Potri.003G048600 ID=Potri.003G048600.1.v4.1 annot-version=v4.1 MSSMHSTVHYCCVARGNRTLYVYSRGDHEIENSAALCLESTPSYHKWYFETIAEKTFGFLIEDGSVYFTIVDEGLGHPSVLQFLEHVRDEFKKVARKGSR GGFSGMNSINVQEQLVPVICSLITSLEHVVCNDGAGESSSSDNVGLSPSPLNANEQIEVVNSTKAPLLGKSNKQDKRKSKDHVITIRDIELEEHRNSTDR GAKLDSATLDSNNQGGVGSSISLQKDLGSMRIRSSSQSIRKKWWRQVRIVLAIDVAICLILFLTWLSICGGFGCTH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10170			SNARE-like superfamily protein...		Potri.003G048600 [exp]	0	1
AT1G04850			ubiquitin-associated (UBA)/TS-...		Potri.017G056900 [exp]	4.24	0.7306
AT1G24440			RING/U-box superfamily protein...		Potri.010G052700 [exp]	4.47	0.7729
AT1G02680		TAF13	TBP-associated factor 13 (.1)		Potri.014G122500 [exp]	4.89	0.7715
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G096400 [exp]	8.06	0.7788
AT2G39170			unknown protein		Potri.008G035000 [exp]	8.12	0.7423
AT3G15420			Transcription factor TFIIIC, t...		Potri.011G121800 [exp]	8.48	0.7481
AT3G14205			Phosphoinositide phosphatase f...		Potri.001G163900 [exp]	9.79	0.7644
AT3G10572		APEM9	ABERRANT PEROXISOME MORPHOLOGY...		Potri.006G078700 [exp]	15.09	0.7292
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Potri.003G035200 [exp]	16.27	0.7600
AT5G52900		MAKR6	MEMBRANE-ASSOCIATED KINASE REG...		Potri.014G091500 [exp]	25.45	0.7176

Compare expression of checked genes

Potri.003G048600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.