Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48120 991 / 0 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011436 [exp] 1088 / 0 AT5G48120 900 / 0.0 ARM repeat superfamily protein (.1) Lus10037557 [exp] 938 / 0 AT5G48120 775 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF12460 [poplar] [flax] MMS19_C RNAPII transcription regulator C-terminal CL0020 [poplar] [flax] PF14500 [poplar] [flax] MMS19_N Dos2-interacting transcription regulator of RNA-Pol-II
Representative CDS sequence Show only first row Show all	>Potri.003G048800.1 pacid=42786441 polypeptide=Potri.003G048800.1.p locus=Potri.003G048800 ID=Potri.003G048800.1.v4.1 annot-version=v4.1 ATGGCAGAACCGAGTCAGCTGACTCAGCATATTGAATCTTTTGTTGACTCATCATGCTCCTCTACTCAGCAGGCTGCAAGTTTGGATGCAATAGTTTCCT TCGTGAAGAATGATGTAGTAACTATATCATCACTGGTTAGGGAGATGGAGATGTATCTGACTACAACAGATAGCATAATCCGTGCACGAGGCGTCCTTCT GCTTGGAGAAGCACTTAAATGTCTTTCATCAAAGCCGCTGGATGCTGCTACTATTCATAGCTTGATGTCTTTCTTCAAAGAGCGACTGGCAGATTGGAGA GCTTTACGTGGTGCACTTGTTGGTTGTTTGGCATTGGTGAAAAGGAAAAGTGGTGGTATGGTCACTAGCAGTGATGCTAAAGGAGTTGCAGAGTCTTTTT TGCAAAACTTGCAGGTTCAGTCTTTAGGACAACATGACAGGAAGCTTTGCTTTGAACTTATGGAATGTCTGCTAGAATACTATCCCCACGCTGTTGCTTC TCTGGGTGATGATCTTATTTATGGAATTTGTGAAGCTATTGATGGAGAAAAGGATCCTCAATGCCTAATGCTAGCATTTCACATCATGGAGGTTCTAGTG CAAGTGTTTCCTGATCCTTGTGGTCCCATAGAAAGTTTTGCTAGCGATCTATTTGGCATTTTGAGCAGTTACTTTCCCATTCATTTTACACATCCCAAAG CTGAAGAGGATGTTCAGGTGAAAAGGGATGATCTTTCAAGGGCATTAATGCTTGCATTCTCATCCTCGCCTCTTTTCGAGCCATCTGTCATTCCGTTGCT TCTTGAGAAACTTTCTTCCTCCCTATCATCCGCGAAGGTTGATTCTTTAAAGTACCTTAGCTATTGCACATCAAAGTATGGAGCAGAAAGAATCGCAAAA CATGCTGGAGCTATTTGGTCTTCACTGAAAGATGTAATATTTACTTCAGGACAATCATTTGTGTTATCCTTTACCCCAGAATCCCTAGGTGGTCTAGGCT GTCAGGAGAATGAAATAGCAGCTGAAGCACTGGCTCTACTGGAAAAGGTTGTTATCCAAAATAATGATTTGTTCTCAAGTATGATTGTTGGTGATGAAGA AATAAATATGGTTTTGAATTCCATCACTGGCTGCCAGAGTTACAATGAAATTCCCTTGCAAAGCACACAGAAACTGTATTCAGTCGGTCGTATCCTTTAT GTTTCTGTGAAGGCATCTGTTGCTTCCTGCAGTAGAATTTTTCAATATTTCTTCTCCTGCTTGATGGAGAGCATGGGGCTTCCAGTTGTGAATGGATCTG GGACTTGCTCTTTTAATGATGACTGCATAATCTCCAAAAGACCTAATCACGGATCTCTTTATCTCTGTGTTGAACTTCTTGGAGCATGCAGAGATTTGGT CATCAGTTCCGGTGATCTTGCATCACAATGTGTTTCTGCAAATGAGACATGGTGCTGCTTGCTTCAGAGATTTTCTACCTCTTTAAGCAAGATTTTCAGT TCAACCCTGGCAACAAGTACAGACAAGCCTGCTCATGACGCGGATGTGTATCTTGGAGTGAAGGGTTTGCAAATTCTAGCTACATTCCCTGGAGGCTATT TACTAGTATCAAAATCTACTTGTGAAAGTATTTTGATGACCTTTGTATCTATTATCACTGTTGATTTCAATAAGACATTGTTGTGGAAACTGTCGGTGAA GGCACTGGTTCAGATTGGCTTGTTTATTCATGGTAGTAACGAGTCTGAGAAGTCAATGAGCTATATGGATATTGTTGTTCAGAAGATTGTTTCAATGATA TCATCTGATAATCATGATATACCATTTCAACTCCAACTGGAAGCCATCTCTGACATTGGCACAAGTGGGCTTCAATACATGCTGAAAATTGTTACTGGAT TGCAAGAAGTTATACGTGCCAATCTGGCTGAGGTTTATGTTCAAGGAAATGTGAAATCAGCAAAGGTCATAATTCATCTTTTGGAATGTTATTCAAATGA GTTGCTTCCATGGATTCAGAAATATGAAGTTTTCGAGGAAGTCTTGCTCCAATTTGTTGTCAGCATATGGAACCAAATAGAAAATTGCATGGCCTTTCCT GATGGGATCTTTGAAAAAGAGCTTCTTGATGCTACAATGAAAGTGATGAAGCTTGCTGTTGCTTCTTGTTCAGTGGAAAGCCAGAACATAATAATTGATA AAGCTTATACTGTACTCTCATCCAGCACTTTCTTATCAACGAAGGATTCCTTGTCCTCTCTTCAAGCTCAACTAGAAGAGTTAGAAGATACTCAAGAAAC GAACAAATTTTCCAGTAGAGATGAGTGGATTCATTCTTTATTTATATCAGTAATTATAGCACTTCATCCTCAAACACGCATTCCGAATATAAGAACAGTA CTGCATTTTCTCATGATTGTGTTCCTTAAGGGCTATGTTACGGCTGCTCAGGCGTTAGGTTCTCTAGTTAACAAATTGGATCTAAAGACTAGTGGAACAG AGTATTCAGGTGGTTGTACCTTTGAAGAAGCAATGGATATAATCTTTGGTAAAAATTTAAGTTCTTCTGACCATGTTTCTGCTGGGAGATCTGGTATCAC AGGCTATTGGAGTGAGACAGGTCTCACTAACTTATGCCTTGGTGCTGCAAACAGTGGTTTGCTTGAAATTCATTCCATTGTTGGGTTGGCATGGATTGGG AAAGGTTTGCTTATGCGTGGACACGAAAAGGTTAAAGACATAACTATAGTTTTTTTAGAGTGCCTGCAATCAAATGGCAGAAGGGGTGCCTTGCCATTGG AAGAAAATAATTGCAACTGGGATATGCGCCTGTCTGCAATGAAATGTGCAGCAGACGCATTTCAGGTTCTTATGAGTGATTCTGAGCTTTGCTTAAACCG CAAATTTCATGCAATAATACGACCACTTTATAAGCAACGATTTTTCTCCACCATAATGCCCATCCTGCAGTCTTTGATAATTCCGTCTGACTCGTTACTC TCAAGATCTATGCTGTATCGGGCTTTTGCAAATGTTGTAATTGGCACCCCATTGATTGTTATCTTGAATGATGCAAAAAAGTTAATTCCAATGGTGCTGG ATAGCTTAAAGTTGTTGAGCAAGGATGTTTTGGATAAAGATATAATGTACAGCCTTCTGCTAGTCCTGTCAGGCATTTTGACAGATAAAAATGGACAAGA AGGCGTAATAGAGAATGCTCATATTATCATCAATTACCTCATTGGGTTTGTCACCTACCCTCATACGATGCTTGTCCGAGAGACAACAATTCAATGTCTT GTTGCCATGTCAGAGTTGCCTCACACAAGGATTTACCCCATGCGAATCCAGGTGTTGCAAGCTGTATCAAAAGCTCTTGATGATCCAAAGAGGGCTGTTC GTCAAGAAGCTGTTAGATGTCGGCAAGCGTGGTCAGTGATTTAG
AA sequence Show only first row Show all	>Potri.003G048800.1 pacid=42786441 polypeptide=Potri.003G048800.1.p locus=Potri.003G048800 ID=Potri.003G048800.1.v4.1 annot-version=v4.1 MAEPSQLTQHIESFVDSSCSSTQQAASLDAIVSFVKNDVVTISSLVREMEMYLTTTDSIIRARGVLLLGEALKCLSSKPLDAATIHSLMSFFKERLADWR ALRGALVGCLALVKRKSGGMVTSSDAKGVAESFLQNLQVQSLGQHDRKLCFELMECLLEYYPHAVASLGDDLIYGICEAIDGEKDPQCLMLAFHIMEVLV QVFPDPCGPIESFASDLFGILSSYFPIHFTHPKAEEDVQVKRDDLSRALMLAFSSSPLFEPSVIPLLLEKLSSSLSSAKVDSLKYLSYCTSKYGAERIAK HAGAIWSSLKDVIFTSGQSFVLSFTPESLGGLGCQENEIAAEALALLEKVVIQNNDLFSSMIVGDEEINMVLNSITGCQSYNEIPLQSTQKLYSVGRILY VSVKASVASCSRIFQYFFSCLMESMGLPVVNGSGTCSFNDDCIISKRPNHGSLYLCVELLGACRDLVISSGDLASQCVSANETWCCLLQRFSTSLSKIFS STLATSTDKPAHDADVYLGVKGLQILATFPGGYLLVSKSTCESILMTFVSIITVDFNKTLLWKLSVKALVQIGLFIHGSNESEKSMSYMDIVVQKIVSMI SSDNHDIPFQLQLEAISDIGTSGLQYMLKIVTGLQEVIRANLAEVYVQGNVKSAKVIIHLLECYSNELLPWIQKYEVFEEVLLQFVVSIWNQIENCMAFP DGIFEKELLDATMKVMKLAVASCSVESQNIIIDKAYTVLSSSTFLSTKDSLSSLQAQLEELEDTQETNKFSSRDEWIHSLFISVIIALHPQTRIPNIRTV LHFLMIVFLKGYVTAAQALGSLVNKLDLKTSGTEYSGGCTFEEAMDIIFGKNLSSSDHVSAGRSGITGYWSETGLTNLCLGAANSGLLEIHSIVGLAWIG KGLLMRGHEKVKDITIVFLECLQSNGRRGALPLEENNCNWDMRLSAMKCAADAFQVLMSDSELCLNRKFHAIIRPLYKQRFFSTIMPILQSLIIPSDSLL SRSMLYRAFANVVIGTPLIVILNDAKKLIPMVLDSLKLLSKDVLDKDIMYSLLLVLSGILTDKNGQEGVIENAHIIINYLIGFVTYPHTMLVRETTIQCL VAMSELPHTRIYPMRIQVLQAVSKALDDPKRAVRQEAVRCRQAWSVI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48120			ARM repeat superfamily protein...		Potri.003G048800 [exp]	0	1
AT3G52140			tetratricopeptide repeat (TPR)...		Potri.001G271200 [exp]	3.46	0.8408
AT4G01860			Transducin family protein / WD...		Potri.002G189400 [exp]	4.00	0.8390
AT1G17690		NOF1	nucleolar factor 1, unknown pr...		Potri.003G010000 [exp]	7.07	0.8037
AT5G64420			DNA polymerase V family (.1)		Potri.001G285600 [exp]	8.48	0.8043
AT2G29200		APUM1	pumilio 1 (.1)		Potri.010G201100 [exp]	9.00	0.8320
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Potri.016G075700 [exp]	9.16	0.8193	Pt-SPY.1
AT3G09040			Pentatricopeptide repeat (PPR)...		Potri.005G187800 [exp]	10.19	0.8061
AT4G24270		EMB140	EMBRYO DEFECTIVE 140 (.1.2)		Potri.004G229732 [exp]	13.26	0.7914
AT2G02560		TIP120, HVE, ET...	HEMIVENATA, CULLIN-ASSOCIATED ...		Potri.003G000500 [exp]	14.56	0.7567	CAND1.2
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Potri.005G206500 [exp]	15.49	0.8173	HVT1.2

Compare expression of checked genes

Potri.003G048800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.