Plant FIBer expression Database

Potri.003G048900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G79730 547 / 0 ELF7 EARLY FLOWERING 7, hydroxyproline-rich glycoprotein family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G190000
[exp]
765 / 0 AT1G79730 563 / 0.0 EARLY FLOWERING 7, hydroxyproline-rich glycoprotein family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037558
[exp]
600 / 0 AT1G79730 580 / 0.0 EARLY FLOWERING 7, hydroxyproline-rich glycoprotein family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03985 Paf1 Paf1
Representative CDS sequence
>Potri.003G048900.8 pacid=42785306 polypeptide=Potri.003G048900.8.p locus=Potri.003G048900 ID=Potri.003G048900.8.v4.1 annot-version=v4.1
ATGGCCTCCTATAGGCCATTCACCGCACCACCGCAACCGCCACAACCACCGCAACAACAACAGCAAAGACCAAATCAGTATACTCAAAGTTACAATCCTC
AATTGGCCCCACCACCTCAAAACTATCAGAATTACTCACAACATTACCCTCAGCCGCCCCGCCCCGCCCCGCCTCCTCACCAACAATACCCTTATCAGCG
ACCCCCTCCTCCTGAATCCTCTTACCCACCTCCTCCTCCTCCACCAGCACCACTACAGCAACAGCCGCCGCCGCCGCCACCACCTAATATGTACTATCCC
ACTTCACATTATGCTCTTCAATCATTGCAGCAGCCAATTCAGCCTCCACCTCCACCTCCACCCCCTTCGTCTCCTCCTCCCAGCTCTTCAATTCCACCCC
CACCCCCTCCCAGCTCCCCACCCCCTCCCCCTCCTAAGGACAGTGCATTTGAAAGAGATAAAGGGGTGTCTCAGGAGAAGAGAGAACATGATCATCCCAA
TCATGGGAAACATCAGCAGCAGCAGTCGCAGCTTCCTCTGGTGGTGAAGAAGGCGAATGGGCACCCAGGGAGGGTGGAGACCGAGGAGGAGAGGAGGTTG
AGGAAGAAGAGAGAGTTTGAGAAGCAAAGGCAGGAGGAGAACCGTAGGCAGCAATTGAAAGAGTCGCAGAACTCTGCTTTGCTAAAGAACCACGTGATCT
CTTCTCAAAAAGGGCATGGTTCCATTGTTGGTTCACGGTTGGGGGATAGGGTGGCAACTCCATTGTTGGGTGGGGAGAGGGCTGAGAATAGGTTGAAGAA
GCCAACGACCTTCATGTGCAAGTTGAAATTCCGGAATGAACTTCCTGATCCGAGTGCTCAACCGAAGCTGATGCCTTTAAAGAGAGAGAAAGATCGATTT
ACTAAGTACACAATCACATCTTTGGAGAAAATGTATAAACCTCAACTATATGTTGAGCCAGATCTTGGGATACCTCTTGACCTTCTTGATCTCAGTGTAT
ACAATCCTCCTAGTGTTAGACCACTTCTTGCTCCTGAAGATGAGGAATTGTTGCATGATGATGAGTCAGTCACCCCTGTAAAGAGAGACGGCATAAAAAG
AAAAGAAAGGCCAACAGATAAAGGTGTTTCTTGGCTAGTGAAGACACAGTATATATCTCCTCTTAGCATGGAGTCAGCTAAACTGTCTCTGACTGAAAAA
CAAGCTAAAGAACTGAGAGAGATGAAGGGAGGCTGCAAGCTTTTGGACAATCTCAATAAAAGGGAGAGACAAATCAAGGAAATTCAAGCATCGTTTGCCT
CAAACAAGTTACCCCCTGTGCATGCAACTAATAAAAACTTAAAGCCAGTCGAGATTCTGCCTCTGCTACCTGATTTTGATCGGTATGGAGATAAATTTGT
CACAGTAGCATTTGATGGTGCTCCTACAGCTGATGCAGAAAATTACAGGAAGTTCGATCCATCTGACCGTGATGCCTATGAATCATGGGCTATTATGAAA
GCTTGTGTGGCATCAGGTTCAGATCCGGCTAACCCAGAGAAGTTTTTGGCATACACAGTACCTTCTCCAGATGAGCTGTCAAAGGATATGTATGATGAAA
ATGAGGATATCTTATATTCTTGGATTCGCGAGTATCATTGGGATGTACGGGGGGATGATGTCGATGACCCTTCAACGTTCCTTGTTTCATTTGATGAAGC
TGAAGCTCGCTATTTGCCTCTTCCCACAAAGATTAGTTTAAGAAAGAAGAGAGCCAGAGAGGGAAGATCAGGTGACGAGATTGAACATTTTCCTATACCG
TCAAGAGTAACTGTGAGGAAAAGAGCTGTAGCTGCTACAATTGAACAGAGAGATTCGGGGGCTATTTCAAATTCAAGGGGAAACAATTCAAGGATGGAAA
GGTTTGAGGATGAGGATGGCCTTGGAAGACTACAGAGGGTTGCTCTAGACGAGGACCTTCACCATTCTAGTGGGGCTGAAGATGAGATGTCTGAGTGA
AA sequence
>Potri.003G048900.8 pacid=42785306 polypeptide=Potri.003G048900.8.p locus=Potri.003G048900 ID=Potri.003G048900.8.v4.1 annot-version=v4.1
MASYRPFTAPPQPPQPPQQQQQRPNQYTQSYNPQLAPPPQNYQNYSQHYPQPPRPAPPPHQQYPYQRPPPPESSYPPPPPPPAPLQQQPPPPPPPNMYYP
TSHYALQSLQQPIQPPPPPPPPSSPPPSSSIPPPPPPSSPPPPPPKDSAFERDKGVSQEKREHDHPNHGKHQQQQSQLPLVVKKANGHPGRVETEEERRL
RKKREFEKQRQEENRRQQLKESQNSALLKNHVISSQKGHGSIVGSRLGDRVATPLLGGERAENRLKKPTTFMCKLKFRNELPDPSAQPKLMPLKREKDRF
TKYTITSLEKMYKPQLYVEPDLGIPLDLLDLSVYNPPSVRPLLAPEDEELLHDDESVTPVKRDGIKRKERPTDKGVSWLVKTQYISPLSMESAKLSLTEK
QAKELREMKGGCKLLDNLNKRERQIKEIQASFASNKLPPVHATNKNLKPVEILPLLPDFDRYGDKFVTVAFDGAPTADAENYRKFDPSDRDAYESWAIMK
ACVASGSDPANPEKFLAYTVPSPDELSKDMYDENEDILYSWIREYHWDVRGDDVDDPSTFLVSFDEAEARYLPLPTKISLRKKRAREGRSGDEIEHFPIP
SRVTVRKRAVAATIEQRDSGAISNSRGNNSRMERFEDEDGLGRLQRVALDEDLHHSSGAEDEMSE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G79730 ELF7 EARLY FLOWERING 7, hydroxyprol... Potri.003G048900
[exp]
0 1
AT2G39340 AtSAC3A yeast Sac3 homolog A, SAC3/GAN... Potri.010G213700
[exp]
1.00 0.9130
AT2G44950 RDO4, HUB1 REDUCED DORMANCY 4, histone mo... Potri.014G055800
[exp]
2.44 0.8941
AT3G19895 RING/U-box superfamily protein... Potri.008G085700
[exp]
2.82 0.8889
AT1G11060 WAPL (Wings apart-like protein... Potri.011G049300
[exp]
3.87 0.8902
AT2G04540 Beta-ketoacyl synthase (.1) Potri.002G219500
[exp]
4.79 0.8219
AT4G04790 Tetratricopeptide repeat (TPR)... Potri.011G133100
[exp]
7.48 0.8676
AT1G53040 Protein of unknown function (D... Potri.011G119300
[exp]
8.66 0.8217
AT4G39160 MYB Homeodomain-like superfamily p... Potri.010G019600
[exp]
8.94 0.8714
AT1G05670 Pentatricopeptide repeat (PPR-... Potri.019G075900
[exp]
9.48 0.8329
Potri.004G102400
[exp]
11.40 0.8187

Potri.003G048900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.