Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25760 1041 / 0 Protein kinase family protein (.1.2) AT3G13670 954 / 0 Protein kinase family protein (.1) AT3G03940 922 / 0 Protein kinase family protein (.1) AT5G18190 909 / 0 Protein kinase family protein (.1) AT3G03930 349 / 9e-116 protein kinase-related (.1) AT4G26100 199 / 2e-56 CKL1, CK1 casein kinase 1 (.1) AT2G19470 197 / 7e-56 CKL5 casein kinase I-like 5 (.1) AT5G57015 192 / 4e-54 CKL12 casein kinase I-like 12 (.1) AT1G72710 192 / 5e-54 CKL2 casein kinase 1-like protein 2 (.1) AT3G23340 191 / 1e-53 CKL10 casein kinase I-like 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G189100 [exp] 1211 / 0 AT2G25760 1051 / 0.0 Protein kinase family protein (.1.2) Potri.018G046400 [exp] 1083 / 0 AT2G25760 1129 / 0.0 Protein kinase family protein (.1.2) Potri.006G236600 [exp] 1068 / 0 AT2G25760 1095 / 0.0 Protein kinase family protein (.1.2) Potri.003G215700 [exp] 986 / 0 AT3G13670 1060 / 0.0 Protein kinase family protein (.1) Potri.001G009700 [exp] 979 / 0 AT3G13670 1100 / 0.0 Protein kinase family protein (.1) Potri.019G034500 [exp] 930 / 0 AT3G03940 1207 / 0.0 Protein kinase family protein (.1) Potri.018G065900 [exp] 203 / 1e-57 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.001G197600 [exp] 202 / 1e-57 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.006G147800 [exp] 200 / 2e-56 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005479 [exp] 1044 / 0 AT2G25760 1093 / 0.0 Protein kinase family protein (.1.2) Lus10025827 [exp] 991 / 0 AT2G25760 1030 / 0.0 Protein kinase family protein (.1.2) Lus10039203 [exp] 980 / 0 AT3G13670 1132 / 0.0 Protein kinase family protein (.1) Lus10042455 [exp] 978 / 0 AT3G13670 1124 / 0.0 Protein kinase family protein (.1) Lus10026214 [exp] 937 / 0 AT3G13670 1085 / 0.0 Protein kinase family protein (.1) Lus10014152 [exp] 936 / 0 AT2G25760 985 / 0.0 Protein kinase family protein (.1.2) Lus10037565 [exp] 924 / 0 AT2G25760 977 / 0.0 Protein kinase family protein (.1.2) Lus10024261 [exp] 875 / 0 AT3G03940 961 / 0.0 Protein kinase family protein (.1) Lus10023628 [exp] 856 / 0 AT3G03940 961 / 0.0 Protein kinase family protein (.1) Lus10011091 [exp] 848 / 0 AT5G18190 970 / 0.0 Protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.003G049700.1 pacid=42786090 polypeptide=Potri.003G049700.1.p locus=Potri.003G049700 ID=Potri.003G049700.1.v4.1 annot-version=v4.1 ATGCCGGTGCTGCGTAGTCAAGTGCTCAGAGGCCGGGGAGGAGAAGCAACACCGAAGCAAGAAAATAAACAGAAGATGCACCAGGAGCACAAGAACAATC CAGACGAAGTAGTAGAGCCGATTGCGACAAGGACAAGGAGAAGGCGGGCAGCAGCGGGGGCGGCATTGGATAAGGAACAGAAAGCCGGCAATGAGAGGGT AGTAGTGGGTGTGGGTGGTGCTGTTGTGGTGGGGACGGTGAAAGAGGAGGAGGAGGAGGAGAAAAGGGATTTAGAGTTTGTTGGAGAAAAGAAGCCGATG GATGTGTTTGATAGTGGTGGCAAAGGTAATGATAAGCCACTTGCTGCTGGCGGAGAGGATGAGGGAACCTCTGCTCCGATACCCGACCAGGTTCAGGTTG AGGATTCCCCAGTGTACAGAGTAGAAACAAAGTTGGGAAAGGGTGGCTTTGGTCAAGTGTATGTTGGTCGACGTGTTTCTGCTGTAAATAAAAATGAGAA AGCTGGTGCAGGAGCTGTAGAGGTGGCACTAAAATTCGAGCATAAGAGTAGTAAAGGATGTAACTATAGACCACCTAACGAGTGGCAAGTTTATGATACT CTTGGTGGCAGTCATGGTGTACCACTAGTACACTATAAGGGTCGGCAAGGTGACTATTATGTCATGGTTATGGATATGTTGGGTCCAAGCCTGTGGGATG TTTGGAACAATAACTTTAACTCGAACTTAATGTCCACTGAAATGGTTGCATGTATTGCCATTGAAGCCATATCCATATTGGAAAAGATGCACTCCAGAGG TTATGTCCATGGAGATGTAAAGCCTGAGAATTTTCTGCTTGGTCCTCTGGGAACTCCTAAGGAGAAAAAATTATTTCTAGTTGATCTTGGATTGGCTACT AGATGGCAGGATAGTTCAACTGGTTTGCATGTTGAGTATGACCAAAAGCCAGATGTTTTCAGGGGAACAGTGCGATATGCTAGTGTGCATGGCCATTTAG GGAGAACTGGTAGCAGGAGGGATGATTTGGAATCACTTGCTTACACACTTATTTTTCTTCTCCGTGGTCGCTTACCTTGGCAAGGGTACCAGGGAGAAAA CAAGGGGTTTGTCGTTTGCAAGAAGAAGATGGCAACAACCTCAGAGGCGCTTTGTTGCTTCTGTCCACAGCCTTTCAAACAGCTCATTGAATATGTAGTG AACTTAAAGTTTGATGAAGAACCTGATTATGCAAAATGCATTTCCCTCTTTGATGGAATTGTTGGCACAAATCCAGATATTAGACCTCTTAACACAGAAG GTGCTCAGAAGCTTATTTATCAGGTTGGTCACAAGAGAGGAGGGTTGACTATGGATGAGGAAGACGAACAACTGAAGAAGAAGGTTCGTATGGGCATGCC GGCAACACAATGGATTAGTGTGTACAATGCACATAGATCAATGAAACAAAGGTATCACTATAATGTGGCTGATGCAAGGCTTGGCCAGCACATTGAAAAA GGAAACGAGGATGGCTTATTTATTAGCAGTGTAGCTTCATGTCAAAATCAATGGGCCATTATTATGGATGCTGGTGCAAATTATTCCGCACAAGTCTATG AGCTCTCACCATATTTTCTACACAAGGAATGGATAATGGAACACTGGGAAAAGAATTATTATATCAGTGCAATTGCTGGAGCGAACAATGGAAGCTCATT AATCGTAATGTCTAAGGGTACCAGTTATATGCAACAGTCTTATAAAATTAGTGATTCATTTCCTTTTAAATGGATTAATAAAAAATGGAAGGAGGGCTTT TATGTCACTGCAATGGCCACCTCGGGGAGTAGATGGGGAGTTGTCATGTCACGTGGTGCAGGATTTGCAAAGCAGGTGGTTGAACTTGATTTCCTGTATC CTAGTGAAGGAATACATCTACGGTGGGATTCTGGATATCGTATCACAGCAACTGCAGCAACTTGGGACCAGGCGGCTTTCGTTCTGAGTTTGCCAAAAAG GAAACATACAGATGAAGCACAGGAGACCCTTCGAACCTCTGCTTTTCCTAGCACGCATGTTAAGGAGAAATGGGCAAAAAATCTATATGTTGCATCCATA TGTTACGGACGAACGACATCGTGA
AA sequence Show only first row Show all	>Potri.003G049700.1 pacid=42786090 polypeptide=Potri.003G049700.1.p locus=Potri.003G049700 ID=Potri.003G049700.1.v4.1 annot-version=v4.1 MPVLRSQVLRGRGGEATPKQENKQKMHQEHKNNPDEVVEPIATRTRRRRAAAGAALDKEQKAGNERVVVGVGGAVVVGTVKEEEEEEKRDLEFVGEKKPM DVFDSGGKGNDKPLAAGGEDEGTSAPIPDQVQVEDSPVYRVETKLGKGGFGQVYVGRRVSAVNKNEKAGAGAVEVALKFEHKSSKGCNYRPPNEWQVYDT LGGSHGVPLVHYKGRQGDYYVMVMDMLGPSLWDVWNNNFNSNLMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPLGTPKEKKLFLVDLGLAT RWQDSSTGLHVEYDQKPDVFRGTVRYASVHGHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFVVCKKKMATTSEALCCFCPQPFKQLIEYVV NLKFDEEPDYAKCISLFDGIVGTNPDIRPLNTEGAQKLIYQVGHKRGGLTMDEEDEQLKKKVRMGMPATQWISVYNAHRSMKQRYHYNVADARLGQHIEK GNEDGLFISSVASCQNQWAIIMDAGANYSAQVYELSPYFLHKEWIMEHWEKNYYISAIAGANNGSSLIVMSKGTSYMQQSYKISDSFPFKWINKKWKEGF YVTAMATSGSRWGVVMSRGAGFAKQVVELDFLYPSEGIHLRWDSGYRITATAATWDQAAFVLSLPKRKHTDEAQETLRTSAFPSTHVKEKWAKNLYVASI CYGRTTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25760			Protein kinase family protein ...		Potri.003G049700 [exp]	0	1
AT5G04460			RING/U-box superfamily protein...		Potri.008G030100 [exp]	4.58	0.7894
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Potri.006G143300 [exp]	6.16	0.8207	PAFC901
AT1G31810		AFH14	Formin Homology 14 (.1)		Potri.003G103800 [exp]	9.59	0.7950
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Potri.013G035600 [exp]	13.26	0.7558	XRN4.2
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.001G368600 [exp]	18.22	0.7855
AT2G17580			Polynucleotide adenylyltransfe...		Potri.005G100100 [exp]	20.00	0.7257
AT2G26780			ARM repeat superfamily protein...		Potri.001G274500 [exp]	21.74	0.7515
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Potri.010G174900 [exp]	22.58	0.7373
AT3G09850			D111/G-patch domain-containing...		Potri.006G189501 [exp]	22.71	0.7599
AT1G67500		ATREV3	recovery protein 3 (.1.2)		Potri.013G022200 [exp]	23.87	0.7318

Compare expression of checked genes

Potri.003G049700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.