Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52140 129 / 1e-37 unknown protein AT3G16330 127 / 8e-37 unknown protein AT4G29110 95 / 3e-24 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G188900 [exp] 304 / 2e-106 AT1G52140 127 / 2e-36 unknown protein Potri.018G086500 [exp] 162 / 3e-50 AT4G29110 139 / 3e-41 unknown protein Potri.018G046500 [exp] 112 / 8e-31 AT1G52140 94 / 1e-23 unknown protein Potri.006G236700 [exp] 108 / 1e-29 AT4G32860 94 / 4e-24 unknown protein Potri.014G139900 [exp] 85 / 3e-20 AT1G52140 87 / 3e-21 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025828 [exp] 176 / 8e-56 AT1G52140 138 / 8e-41 unknown protein Lus10038274 [exp] 166 / 5e-52 AT3G16330 124 / 2e-35 unknown protein Lus10014153 [exp] 105 / 9e-29 AT4G29110 84 / 1e-20 unknown protein Lus10037566 [exp] 105 / 1e-28 AT1G52140 79 / 2e-18 unknown protein Lus10034944 [exp] 82 / 6e-20 AT1G52140 100 / 3e-27 unknown protein Lus10012967 [exp] 77 / 7e-18 AT1G52140 105 / 5e-29 unknown protein Lus10005478 [exp] 68 / 1e-13 AT1G52140 89 / 2e-21 unknown protein Lus10006040 [exp] 64 / 3e-12 AT1G52140 78 / 2e-17 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05553 [poplar] [flax] DUF761 Cotton fibre expressed protein
Representative CDS sequence Show only first row Show all	>Potri.003G049800.2 pacid=42785440 polypeptide=Potri.003G049800.2.p locus=Potri.003G049800 ID=Potri.003G049800.2.v4.1 annot-version=v4.1 ATGAGGAAGATTGAAGATCGGTGTGGGTCACTACCAGTGATAGCCAAAAGAGCATGGGGCATAGTACGTGTTATCTTCTTCATACTAAGAAAGGGTTTAT CAAATAGAAAACTCTTGGTTGATCTCAACATGATGCTTAAATGTGGTAACAAGATTGCAAGCAAAGCCATAGGCAATCTCATGTTCCACCATCACCACCA CAATGACCATCGCAAGGTCTCATTCACATCCGCACCATGCGAATATGAGTTCAGCTGTAGCAACACTCCTACATACTCGCTCCCCTTCCATATCAGCAAG CGTCGTCACCACCACCATCACTACAATAACTTCTTTCCATGTGCATTCAACACACCACCAACTCACGATGATCATGACATGCTGGTTTTGGAGATGCTGA ACAACAATGAAGTGGTACTGCCTGTGGAGGCGTCCCCATTGTTACTAGGGTTTGGAAGGAGTCCAATGGTGAGGCAGTTGAGGATAACGAACTCATCATT TCCATTGAGAGATCTTGATGATGATAATGGTTTTGTGGACAAAAAAGCTGAAGAGTTTATTGAGAAGTTCTACAAGGAATTGAGGCAGCAAAAAAGAACG AGTGGCTAA
AA sequence Show only first row Show all	>Potri.003G049800.2 pacid=42785440 polypeptide=Potri.003G049800.2.p locus=Potri.003G049800 ID=Potri.003G049800.2.v4.1 annot-version=v4.1 MRKIEDRCGSLPVIAKRAWGIVRVIFFILRKGLSNRKLLVDLNMMLKCGNKIASKAIGNLMFHHHHHNDHRKVSFTSAPCEYEFSCSNTPTYSLPFHISK RRHHHHHYNNFFPCAFNTPPTHDDHDMLVLEMLNNNEVVLPVEASPLLLGFGRSPMVRQLRITNSSFPLRDLDDDNGFVDKKAEEFIEKFYKELRQQKRT SG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52140			unknown protein		Potri.003G049800 [exp]	0	1
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025425 [exp]	4.89	0.8196
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Potri.016G044100 [exp]	6.16	0.7460
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G026200 [exp]	7.93	0.8175
					Potri.014G181301 [exp]	8.77	0.8129
AT4G27290			S-locus lectin protein kinase ...		Potri.001G418100 [exp]	10.00	0.7631
AT5G66350		SHI	SHORT INTERNODES, Lateral root...		Potri.009G121600 [exp]	12.96	0.8084
AT3G22210			unknown protein		Potri.016G018650 [exp]	18.49	0.7304
ATCG01090		ATCG01090.1, ND...	NADPH dehydrogenases (.1)		Potri.013G074950 [exp]	20.19	0.8382
AT3G62930			Thioredoxin superfamily protei...		Potri.014G134000 [exp]	22.84	0.7078
AT1G65790		ARK1	receptor kinase 1 (.1)		Potri.001G412377 [exp]	24.67	0.6313

Compare expression of checked genes

Potri.003G049800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.