Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16300 137 / 2e-40 Uncharacterised protein family (UPF0497) (.1) AT1G79780 130 / 6e-38 Uncharacterised protein family (UPF0497) (.1) AT2G35760 50 / 1e-07 Uncharacterised protein family (UPF0497) (.1) AT4G16442 43 / 4e-05 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G188000 [exp] 318 / 1e-111 AT3G16300 131 / 5e-38 Uncharacterised protein family (UPF0497) (.1) Potri.006G016900 [exp] 42 / 0.0001 AT2G35760 250 / 4e-85 Uncharacterised protein family (UPF0497) (.1) Potri.010G207000 [exp] 42 / 0.0001 AT3G55390 243 / 8e-83 Uncharacterised protein family (UPF0497) (.1) Potri.017G062100 [exp] 40 / 0.0004 AT4G25040 82 / 6e-20 Uncharacterised protein family (UPF0497) (.1) Potri.012G104300 [exp] 40 / 0.0004 AT4G25040 97 / 7e-26 Uncharacterised protein family (UPF0497) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038271 [exp] 197 / 1e-63 AT3G16300 158 / 2e-48 Uncharacterised protein family (UPF0497) (.1) Lus10025833 [exp] 197 / 2e-63 AT3G16300 153 / 1e-46 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [poplar] [flax] Marvel-like PF04535 [poplar] [flax] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Potri.003G050400.1 pacid=42785764 polypeptide=Potri.003G050400.1.p locus=Potri.003G050400 ID=Potri.003G050400.1.v4.1 annot-version=v4.1 ATGATGATGAATGGGCAAAAACTGGCACCAGCAGCAGAGGTGGCAGTGCAGCTGCCTGAGTCGAAGGTAGCGGCTGATAATATCAGTGGAACCATGAGTG GGCCCCTTGTAGGTGCTTCAGGAGGGGGAACGACCGCTGCTATGAGGCCTTTTGGGCGGAAAGCTGAAGTTATGCACGTGTTACTCAGGTTGCTATGCAT AATAACGTCTGTGGCAGCTCTGTCCTTTATGTTCACAGCACAACAGTCCAGCACCATCTCCATCTATGGCTTCATGCTCCCTGTTCAATCTAAGTGGTCC TTCTCTCACTCATTTGAATATCTGGTTGGAGTCTCTGCAGCTGTTGCCGCACATTCTTTGCTGCAATTGCTGATTAGCATGTCAAGGTTGCTTAGGAAAT CTCCGGTGATTCCATCAAGAAGTCATGCATGGCTTATTTTTGCAGGAGATCAGGTATTTGCATATGCAATGATAAGTGCAGGGGCTGCTGCATCAGGAGT CACCAACCTCAATCGAACAGGAATCCAACATACTGCTTTGCCAAATTTCTGCAAGCCTTTACAGAGCTTCTGTGACCATGTTGCTGTCTCTATATTCTTT ACTTTCACGAGCTGCTTCTTGCTTGCTGCATCAGCTGTTCAGGAAGTCATTTGGCTCTCCAGATCCAAGTATTGA
AA sequence Show only first row Show all	>Potri.003G050400.1 pacid=42785764 polypeptide=Potri.003G050400.1.p locus=Potri.003G050400 ID=Potri.003G050400.1.v4.1 annot-version=v4.1 MMMNGQKLAPAAEVAVQLPESKVAADNISGTMSGPLVGASGGGTTAAMRPFGRKAEVMHVLLRLLCIITSVAALSFMFTAQQSSTISIYGFMLPVQSKWS FSHSFEYLVGVSAAVAAHSLLQLLISMSRLLRKSPVIPSRSHAWLIFAGDQVFAYAMISAGAAASGVTNLNRTGIQHTALPNFCKPLQSFCDHVAVSIFF TFTSCFLLAASAVQEVIWLSRSKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16300			Uncharacterised protein family...		Potri.003G050400 [exp]	0	1
AT1G73620			Pathogenesis-related thaumatin...		Potri.012G047800 [exp]	1.41	0.8863
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Potri.012G079200 [exp]	2.23	0.8234
AT4G39900			unknown protein		Potri.007G093200 [exp]	3.00	0.8347
AT5G01020			Protein kinase superfamily pro...		Potri.016G143200 [exp]	3.60	0.8104
AT4G15800		RALFL33	ralf-like 33 (.1)		Potri.013G017400 [exp]	3.74	0.8098	Pt-RALFL23.3
AT5G28150			Plant protein of unknown funct...		Potri.005G050900 [exp]	4.00	0.8636
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Potri.009G068000 [exp]	4.24	0.8211
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Potri.005G040400 [exp]	4.47	0.8304	Pt-HPT2.3
AT3G05936			unknown protein		Potri.005G000800 [exp]	5.74	0.8140
AT3G23770			O-Glycosyl hydrolases family 1...		Potri.017G060300 [exp]	6.48	0.8179

Compare expression of checked genes

Potri.003G050400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.