Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16290 1159 / 0 EMB2083 embryo defective 2083, AAA-type ATPase family protein (.1) AT5G42270 273 / 5e-80 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT1G50250 272 / 2e-79 FTSH1 FTSH protease 1 (.1) AT5G15250 270 / 7e-79 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT2G30950 264 / 8e-77 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT1G06430 262 / 3e-76 FTSH8 FTSH protease 8 (.1) AT5G53170 249 / 2e-70 FTSH11 FTSH protease 11 (.1) AT3G47060 247 / 7e-70 FTSH7 FTSH protease 7 (.1) AT2G26140 244 / 1e-69 FTSH4 FTSH protease 4 (.1) AT5G58870 242 / 5e-68 FTSH9 FTSH protease 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G249200 [exp] 277 / 3e-81 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.002G012000 [exp] 276 / 3e-81 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.002G215100 [exp] 269 / 2e-78 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 267 / 5e-78 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.014G139500 [exp] 267 / 1e-77 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.015G020700 [exp] 254 / 2e-72 AT5G53170 1096 / 0.0 FTSH protease 11 (.1) Potri.012G000700 [exp] 243 / 2e-68 AT5G53170 1076 / 0.0 FTSH protease 11 (.1) Potri.006G227700 [exp] 239 / 2e-67 AT2G26140 1066 / 0.0 FTSH protease 4 (.1) Potri.002G220366 [exp] 225 / 2e-67 AT1G06430 405 / 1e-138 FTSH protease 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011432 [exp] 1106 / 0 AT3G16290 1176 / 0.0 embryo defective 2083, AAA-type ATPase family protein (.1) Lus10037574 [exp] 1105 / 0 AT3G16290 1175 / 0.0 embryo defective 2083, AAA-type ATPase family protein (.1) Lus10012277 [exp] 269 / 9e-81 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10021824 [exp] 273 / 1e-79 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10016003 [exp] 273 / 1e-79 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001054 [exp] 264 / 1e-76 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 264 / 1e-75 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10038819 [exp] 248 / 3e-70 AT5G53170 1064 / 0.0 FTSH protease 11 (.1) Lus10034572 [exp] 243 / 4e-70 AT5G42270 791 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10014930 [exp] 246 / 7e-70 AT5G53170 1077 / 0.0 FTSH protease 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF01434 [poplar] [flax] Peptidase_M41 Peptidase family M41 CL0023 [poplar] [flax] P-loop_NTPase PF05496 [poplar] [flax] RuvB_N Holliday junction DNA helicase RuvB P-loop domain
Representative CDS sequence Show only first row Show all	>Potri.003G050600.1 pacid=42785709 polypeptide=Potri.003G050600.1.p locus=Potri.003G050600 ID=Potri.003G050600.1.v4.1 annot-version=v4.1 ATGGCCTGTCATTTCCCTTCGAGCTCTTCACTACACCCCAAAACCACCATAAAACCCCACCAAATCCCACTAAGAACCATCACTTACCCTTCCATTAGAT GCAAGAAACAAGACCCAATTCTTGAGAATGATAACAAAACTGAAAATACCAATAAAAAAACCCATTTCAGTTTTCTCTCTTTACCCATAACTCTCACTAT TATCTCCACCTCTCTCACTCCACACCCTGCCTTTGCTGCCACACCAACACCCAAAACTTACCATAAAAAGAAAACCTTAAAAAAGACACAACAAGAAGCC TTGACACCGGACCAGCTTAAACAATGGTCTCAGAATCTTCCAGTTGTATCCAATAGAATACCATATACTCAAGTTTTGATTTTAAAAGAGAACAACAAGC TTAAGCATGTAATTAAAGCGCCTAATGCCTCTTTAAAACAACGTCCGGAGGCTGTTTTAGTGGTTTTAGATGATAATCAAGTGTTCAGGACTGTCTTGCC CTCGTTAGAGAGTAATAGGAGGTTTTGGGATTCATGGGATGAGTTCAAGATTGATGCTTTATGTGTGAATGCATATTCCCCTCCGGTTAAGAGACCTGAG CTTCCTAAGCCATATTTAGGATTTTTGTGGAAAGTTCCAGAGTTTATGCTGTCGAGGTTAAAGCCTAAGAAGGAGTCCAAGAGAGCTATGGAGTTGAGGA TGGCCAGAGAGGAGTTTAAGAGGCAAAGAAAGGAGGAGCTGAAGAAAATGAGAGAGGAAAGAGAAATAATCGAGAAGGCAATCAAGATGCAAAAGAAAGA CGAGGACAGGAGGAGAAAGAGGGAGACTAGGACAAAGAAGTATGAAGAGTCATTGCGTGATGCTCGGAAGAATTATACAAGAATGGCAAGTATGTGGGCA AATTTAGCACAGGACTCAAATGTGACAACTTTGTTAGGGTTGGTGTTTTTTGTAATATTTTATCGTACAGTGGTGCTTAGTTATCGGAAGCAGAAGAAGG ACTATGATGATCGGCTCAAGATTGAGAAGGCAGATGCTGAAGAGAGAAAGAAGATGAGGGAGTTAGAGAGGGAGTTGATGGGTATTGAAGAAGAGGAAGA AGATGAGAGCGTGCCTGGGAAAGCGGAGCAGAATCCATATTTGAAGATGGCTATGCAGTTCATGAAGTCAGGAGCACGTGTTAGGCGTGCACATAATAAG AGATTGCCTCAGTACTTGGAAAGGGGTGTGGATGTGAAGTTCTCTGATGTTGCAGGACTTGGGAAAATACGTCTTGAACTCGAGGAGATTGTGAAATTTT TTACACATGGAGAGATGTACCGCAGGAGAGGAGTGAAGATCCCAGGTGGCATACTTCTTTGTGGTCCCCCTGGGGTGGGGAAAACTTTACTGGCAAAAGC TGTGGCCGGTGAGGCAGGTGTAAACTTCTTCTCCATCTCTGCATCTCAATTTGTGGAAATATATGTTGGAGTTGGTGCTTCTCGAGTTCGAGCACTTTAT CAAGAAGCAAAGGAAAACGCTCCATCTGTTGTTTTCATTGATGAACTGGATGCTGTTGGAAGGGAGCGTGGTTTGATTAAAGGTTCTGGCGGACAAGAAC GTGATGCCACTCTTAATCAGCTCCTTGTATCCTTGGATGGGTTTGAAGGTAGAGGGGAAGTGATCACTATTGCTTCCACAAATAGACCAGACATTCTAGA CCCAGCACTTGTGAGGCCTGGGCGGTTTGATCGAAAAATATTTATACCTAAACCTGGCCTCATAGGCCGCATGGAAATTCTGAAGGTTCATGCTCGTAAG AAACCCATGGCTGATGATGTGGACTATATGGCTGTTGCAAGCATGACAGATGGAATGGTTGGTGCAGAGCTCGCCAACATAATTGAGGTTGCTGCAATTA ATATGATGCGTGATGGAAGGACTGAGATTACAACTGATGACTTATTACAAGCTGCACAAATAGAGGAAAGAGGAATGCTGGATAGAAAGGAAAGGAGCCC TGAAACATGGAAGCAAGTAGCTATTAATGAAGCAGCCATGGCTGTTGTGGCTGTGAACTTTCCTGATCTCAGAAATATCGAGTTTGTAACAATTGCTCCC AGAGCTGGCAGGGAACTTGGTTATGTTCGGATGAAAATGGATCATGTCAAATTTAAGGAAGGAATGCTTAGTCGGCAATCCCTTCTGGACCATATCACTG TTCAACTGGCACCACGTGCAGCTGATGAGCTTTGGTATGGTGAGGGTCAGTTGAGTACAATATGGGCTGAAACAGCAGACAATGCTAGGTCAGCAGCACG GAGCTATGTTCTTGGTGGCCTTTCTGAGAAACATCATGGTCTATCCAACTTCTGGGCTGCAGATCGAATTAATGAAATTGATTTGGAGGCACTACGGGTT ATGAACTTTTGTTATGATGGTGCAAAAGAGATTCTGCAGCAGAACCGAAAACTGATGGATGCTGTTGTTGATGAACTTGTCCGAAAGAAAAGTTTGACCA AACAAGAATTTTTTAACTTAGTTGAGTTGCATGGTGTGATCAAACCTATGCCACCAAGTATACTCTACATCAGGGTTGCCAAGCGTGCACAGTTTCAAGA AATGTTGGTGCACCAGAATGAAACAACTATAACAAGCAATGCAAGAGCAACATGCCAAGAGAGCTCAATTTAG
AA sequence Show only first row Show all	>Potri.003G050600.1 pacid=42785709 polypeptide=Potri.003G050600.1.p locus=Potri.003G050600 ID=Potri.003G050600.1.v4.1 annot-version=v4.1 MACHFPSSSSLHPKTTIKPHQIPLRTITYPSIRCKKQDPILENDNKTENTNKKTHFSFLSLPITLTIISTSLTPHPAFAATPTPKTYHKKKTLKKTQQEA LTPDQLKQWSQNLPVVSNRIPYTQVLILKENNKLKHVIKAPNASLKQRPEAVLVVLDDNQVFRTVLPSLESNRRFWDSWDEFKIDALCVNAYSPPVKRPE LPKPYLGFLWKVPEFMLSRLKPKKESKRAMELRMAREEFKRQRKEELKKMREEREIIEKAIKMQKKDEDRRRKRETRTKKYEESLRDARKNYTRMASMWA NLAQDSNVTTLLGLVFFVIFYRTVVLSYRKQKKDYDDRLKIEKADAEERKKMRELERELMGIEEEEEDESVPGKAEQNPYLKMAMQFMKSGARVRRAHNK RLPQYLERGVDVKFSDVAGLGKIRLELEEIVKFFTHGEMYRRRGVKIPGGILLCGPPGVGKTLLAKAVAGEAGVNFFSISASQFVEIYVGVGASRVRALY QEAKENAPSVVFIDELDAVGRERGLIKGSGGQERDATLNQLLVSLDGFEGRGEVITIASTNRPDILDPALVRPGRFDRKIFIPKPGLIGRMEILKVHARK KPMADDVDYMAVASMTDGMVGAELANIIEVAAINMMRDGRTEITTDDLLQAAQIEERGMLDRKERSPETWKQVAINEAAMAVVAVNFPDLRNIEFVTIAP RAGRELGYVRMKMDHVKFKEGMLSRQSLLDHITVQLAPRAADELWYGEGQLSTIWAETADNARSAARSYVLGGLSEKHHGLSNFWAADRINEIDLEALRV MNFCYDGAKEILQQNRKLMDAVVDELVRKKSLTKQEFFNLVELHGVIKPMPPSILYIRVAKRAQFQEMLVHQNETTITSNARATCQESSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16290		EMB2083	embryo defective 2083, AAA-typ...		Potri.003G050600 [exp]	0	1
AT1G48650			DEA(D/H)-box RNA helicase fami...		Potri.015G042500 [exp]	4.89	0.9137
AT5G23890			unknown protein		Potri.015G145700 [exp]	5.19	0.8768
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.004G171600 [exp]	5.47	0.8926
AT5G16180		CRS1, ATCRS1	ARABIDOPSIS ORTHOLOG OF MAIZE ...		Potri.017G116700 [exp]	10.09	0.8885
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Potri.018G103300 [exp]	11.18	0.9111
AT3G01370		ATCFM2	Arabidopsis thaliana CRM famil...		Potri.001G350801 [exp]	12.64	0.9124
AT3G04340		EMB2458	embryo defective 2458, FtsH ex...		Potri.013G048700 [exp]	12.88	0.8449
AT5G27330			Prefoldin chaperone subunit fa...		Potri.005G040500 [exp]	13.34	0.8431
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Potri.004G048600 [exp]	14.07	0.8864
AT5G63420	Trihelix	EMB2746	embryo defective 2746, RNA-met...		Potri.012G095800 [exp]	14.49	0.9148

Compare expression of checked genes

Potri.003G050600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.