Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26490 224 / 9e-68 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 222 / 4e-67 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 216 / 1e-64 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 214 / 6e-64 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18950 213 / 2e-63 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 191 / 1e-56 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 189 / 3e-55 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 189 / 5e-55 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50120 185 / 5e-54 Transducin/WD40 repeat-like superfamily protein (.1) AT3G51930 152 / 2e-41 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G239600 [exp] 246 / 2e-76 AT3G50390 280 / 4e-89 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G109500 [exp] 232 / 7e-71 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 223 / 2e-67 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 221 / 1e-66 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 215 / 2e-64 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G131100 [exp] 213 / 9e-63 AT3G50390 535 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G035100 [exp] 206 / 7e-61 AT3G50390 514 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G070900 [exp] 203 / 9e-61 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 202 / 4e-60 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038296 [exp] 444 / 3e-153 AT4G34380 207 / 3e-61 Transducin/WD40 repeat-like superfamily protein (.1) Lus10009510 [exp] 225 / 4e-68 AT3G50390 245 / 1e-75 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011699 [exp] 225 / 5e-68 AT3G50390 256 / 5e-80 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011655 [exp] 214 / 1e-64 AT2G26490 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022475 [exp] 211 / 3e-63 AT3G50390 536 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016289 [exp] 209 / 2e-62 AT2G26490 597 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032868 [exp] 208 / 5e-62 AT2G26490 580 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034117 [exp] 204 / 6e-61 AT5G50120 391 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1) Lus10043466 [exp] 203 / 2e-59 AT5G50120 399 / 3e-136 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021014 [exp] 196 / 3e-57 AT3G18950 423 / 3e-145 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] Beta_propeller PF11715 [poplar] [flax] Nup160 Nucleoporin Nup120/160
Representative CDS sequence Show only first row Show all	>Potri.003G051100.1 pacid=42785619 polypeptide=Potri.003G051100.1.p locus=Potri.003G051100 ID=Potri.003G051100.1.v4.1 annot-version=v4.1 ATGAAACCATATTACAATACCATGAACGAATCCTTTCTCACAATATCTGCACTCGCATTTGCCTTGAGAGACAAAAACAAAGGACAAATCATGGCCTCAT TAGACTCTCCGAACTCACCTCCGAACCCATCTTTTGCAATAAGAGAAACCGCAGCCCACAAGTTCCTGAGAAGCATCTCCATAGGAGAAGCACCCTCATT CTCACATTTTCCTTGTAGCCCAGCACCTCGCCTAAGCACTAATTCAAACATCCACACCTCTCCAATATTCTCCTCTCCTCCTCGTCAAGGCTCTTGCACT CCTGTTGATAACCTTGTCACCAACTCTGAAAGCACTAATTATACTTATAGGTGCCTATCTTCAGTCCTCAAAAGAGATGGCCAGATATTATCTATAGCAA TGTCAAATAGCCTTATCTATTCTGGTTCTTCAACCAATATCATTCGGCTATGGAAACTACCTGAGTTCAGTGAGTGTGGTCACCTTAAGAGTAAGGCCCG CATGGTTGTTGCATTACAAGTTTCACATGATAGGGTTTATGCTGCCTATGCCGATGGCAAGATTCGAATTTGGAGGAGAACATGGGATGGAGCTTTCAAA CACATCCGGTTGGCAACGATTCCTAGCTCCGGCGGATATGTCCGAAGCCTTATTGCCCGGAAAGATAAGATGATGAAGCATGTGGGGCCAATAACATCAT TAGCAATCAACCTTTCTGATGACATCATATATTCAGCTTCCCTTGATAGGACAGTGAAGGTATGGAGAATATCAGACCTCAAATGCATTGAGACCATCCA AGCGCATTTAGAGCCCGTCAATGCCGTTGTTGTGGCCGATGATGGTATACTTTACACCGCCTCCGACGATGCCTCAATCAGAGTCTGGCGGCGCAACTTC TGTAGTGGGGAATGGCCCCATTCGCTCACTGTAACCCTCTCTTCCAAGCACTCACCTGTAAGAACCCTAACCCTAACCTCAGACAATGGGGTGCTGTATG GTGGTTGCACTGATGGTTACATTCATTATTGGCTTAAGGGATGGTTCCCAGGTCAATTACAATACGGTGGTGCCCTCCAGGGTCACACACATGCAATAAT GTGCATGGCCAACGTGTCAAAATATGTGATTAGTGGCTCAGCTGATTCAACCAGTAGGGTTTGGGTGAGAGATTCCGATGGACAACACACATGCCTAGCG GTTTTAGTGGGGCATAGAGGACCTATTAGGTGTGTTACTGCATTTTTGGGGCGATTAGAGGATGATAATGAAGATGGTTGCACGATTTGCACTGGAAGTC TCGACGGGGTCTTGAAATTGTGGCGTGTGACACGTACCAACAAGGAAAGTGGGAGTTTGTCACAAAATGCAAGCGATTATTTTGATCTGTAG
AA sequence Show only first row Show all	>Potri.003G051100.1 pacid=42785619 polypeptide=Potri.003G051100.1.p locus=Potri.003G051100 ID=Potri.003G051100.1.v4.1 annot-version=v4.1 MKPYYNTMNESFLTISALAFALRDKNKGQIMASLDSPNSPPNPSFAIRETAAHKFLRSISIGEAPSFSHFPCSPAPRLSTNSNIHTSPIFSSPPRQGSCT PVDNLVTNSESTNYTYRCLSSVLKRDGQILSIAMSNSLIYSGSSTNIIRLWKLPEFSECGHLKSKARMVVALQVSHDRVYAAYADGKIRIWRRTWDGAFK HIRLATIPSSGGYVRSLIARKDKMMKHVGPITSLAINLSDDIIYSASLDRTVKVWRISDLKCIETIQAHLEPVNAVVVADDGILYTASDDASIRVWRRNF CSGEWPHSLTVTLSSKHSPVRTLTLTSDNGVLYGGCTDGYIHYWLKGWFPGQLQYGGALQGHTHAIMCMANVSKYVISGSADSTSRVWVRDSDGQHTCLA VLVGHRGPIRCVTAFLGRLEDDNEDGCTICTGSLDGVLKLWRVTRTNKESGSLSQNASDYFDL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26490			Transducin/WD40 repeat-like su...		Potri.003G051100 [exp]	0	1
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.018G051400 [exp]	5.19	0.9313
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Potri.011G025000 [exp]	5.83	0.9478	Pt-ATML1.1
AT1G01630			Sec14p-like phosphatidylinosit...		Potri.017G063966 [exp]	8.77	0.9213
AT1G48600		AtPMEAMT	phosphoethanolamine N-methyltr...		Potri.015G039000 [exp]	9.94	0.9167
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Potri.012G117500 [exp]	10.19	0.9253
AT5G19875			unknown protein		Potri.001G009300 [exp]	10.95	0.8819
AT1G14760		KNATM	KNOX Arabidopsis thaliana mein...		Potri.012G043400 [exp]	11.66	0.9059
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G227400 [exp]	12.00	0.9232
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Potri.010G212600 [exp]	12.44	0.9240
AT2G26330		QRP1, ER	QUANTITATIVE RESISTANCE TO PLE...		Potri.006G220100 [exp]	14.69	0.9139

Compare expression of checked genes

Potri.003G051100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.