Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16200 687 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G186200 [exp] 800 / 0 AT3G16200 688 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006829 [exp] 703 / 0 AT3G16200 707 / 0.0 unknown protein Lus10037579 [exp] 693 / 0 AT3G16200 710 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G051200.1 pacid=42785410 polypeptide=Potri.003G051200.1.p locus=Potri.003G051200 ID=Potri.003G051200.1.v4.1 annot-version=v4.1 ATGCACACTCTAGCACACAGTCCCAAAAACACCATCACTGCCACCACCAAGATGCTAGACCGAGTCCTCTCTTCCCGCCGTGTCACCTCTCACCTTGACG ACTCCGATACTGACGCCTCTGCCGACAATTCCAAGACCAAGAAACAGAACCTCTCCTTATTGGCTTCTAATTACCTCTCTCGCTTGTCCCATTTCTGCTT CTGTCCCACTGCTTCTCTCCTTCTCTGTCTCTTACTAGCTATCGTTTTGATCACTTCTCTCGCTTTTCATTCCCGGAGTTTTGTCTGCGTCTCTGATCCC GGTTCTCGCGTTGGCTTCTTCGGTCTCGATGGTCTTGAGTCCGACTTTGGATCACTTGGTGTTCCCTGGTGCAGATCGAAACATGGAAAAACAGTTCAGT GGACATCCAAGGATTTACTCAAAGGCTTGGAAGAGTTTGTACCAATTTATGAAACTCGGCCAATAAAAAACAACATTTATGGGATGGGTTTTGACCACAG CTTTGGGCTTTGGTTCATTGCAAAGTGGCTGAAGCCAGTTCTAATGATTGAGAGTGGTGTTTTTAAGGGGCATTCCACTTGGGTTCTGCGACAAGCAATG CCAGACACACCAATTATTTCACTTTCACCCAGGCATCCTGGGAAGTACCTAAAGAAGGGACCTGCTTATGTTGATGGTAATTGCACATACTTTGCTGGGA AAGATTTTGTAGATTTTGGTAATGTTGATTGGAAGAGCGTGATGAATAAACATGGGATTACTGATATCAGTCGAGTTCTTATCTTTTTTGATGACCATCA GAATGAATTGAAGAGAGTAAAGCAGGCACTAAATGCTGGTTTTCGGCATCTTGTGTTTGAGGATAATTATGATACTGGAACTGGAGATCATTATTCCTTG AGGCAGATATGTGATCAATCCTATATAAGAGGGGGTGGCCATAGTTGCTTTAGGGACAGTGATGAAGCTAGGGTTAGATCGAAGAGGAAGTTGTTTTGGG AGAAAGCAGTTGATATAGATGAACTATGTGGACCGAATGAAGCATGGTGGGGTGTTAGGGGCTGGATGCGGGACAACTTTAATCACAGTAATAAGCCAAT TTCCTATGCAGAACATTTTCAGAACAGCAGGTTTATTGAATCAACTCTTGATGTTTATTGGGAGCTCCCTCCAGTGGCTGGCCCGTCCCTCACCCATCAA ACACGATATGATCCTGCTCGTGCAACCAGTCCTCTTGTTGAAGATGGTCGTTATGGCTTGTTCCAGCGGCTGGGATTAGGTCGACTTGAGGCTTCTGTAT TTAACGGTTATACCCAGATGGTATATATTGAAATCTCAGAACGAGAATCTTGA
AA sequence Show only first row Show all	>Potri.003G051200.1 pacid=42785410 polypeptide=Potri.003G051200.1.p locus=Potri.003G051200 ID=Potri.003G051200.1.v4.1 annot-version=v4.1 MHTLAHSPKNTITATTKMLDRVLSSRRVTSHLDDSDTDASADNSKTKKQNLSLLASNYLSRLSHFCFCPTASLLLCLLLAIVLITSLAFHSRSFVCVSDP GSRVGFFGLDGLESDFGSLGVPWCRSKHGKTVQWTSKDLLKGLEEFVPIYETRPIKNNIYGMGFDHSFGLWFIAKWLKPVLMIESGVFKGHSTWVLRQAM PDTPIISLSPRHPGKYLKKGPAYVDGNCTYFAGKDFVDFGNVDWKSVMNKHGITDISRVLIFFDDHQNELKRVKQALNAGFRHLVFEDNYDTGTGDHYSL RQICDQSYIRGGGHSCFRDSDEARVRSKRKLFWEKAVDIDELCGPNEAWWGVRGWMRDNFNHSNKPISYAEHFQNSRFIESTLDVYWELPPVAGPSLTHQ TRYDPARATSPLVEDGRYGLFQRLGLGRLEASVFNGYTQMVYIEISERES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16200			unknown protein		Potri.003G051200 [exp]	0	1
AT4G20430			Subtilase family protein (.1.2...		Potri.011G155400 [exp]	12.80	0.7876
AT4G23740			Leucine-rich repeat protein ki...		Potri.001G095200 [exp]	14.83	0.7981
AT5G48720		XRI1, XRI	x-ray induced transcript 1 (.1...		Potri.002G244000 [exp]	17.88	0.7807
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Potri.008G088300 [exp]	20.66	0.7644	PtEXPA4,EXPA1.2
AT3G54750			unknown protein		Potri.006G199200 [exp]	26.55	0.7821
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Potri.004G134000 [exp]	33.76	0.7769	DMT901,Pt-MET1.2
AT5G04310			Pectin lyase-like superfamily ...		Potri.010G229000 [exp]	38.23	0.7299
AT2G27775			unknown protein		Potri.009G148400 [exp]	40.49	0.7241
AT5G38460			ALG6, ALG8 glycosyltransferase...		Potri.004G100500 [exp]	49.79	0.6700
AT2G18500	OFP	ATOFP7, OFP7	ARABIDOPSIS THALIANA OVATE FAM...		Potri.007G028000 [exp]	58.86	0.7095

Compare expression of checked genes

Potri.003G051200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.