Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27750 171 / 2e-53 EMB3123 EMBRYO DEFECTIVE 3123, unknown protein AT5G09320 70 / 2e-13 VPS9B Vacuolar sorting protein 9 (VPS9) domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G169600 [exp] 65 / 2e-12 AT5G09320 219 / 8e-67 Vacuolar sorting protein 9 (VPS9) domain (.1) Potri.001G275000 [exp] 50 / 4e-07 AT1G62350 274 / 7e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G134300 [exp] 47 / 3e-06 AT5G09320 114 / 1e-28 Vacuolar sorting protein 9 (VPS9) domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025805 [exp] 221 / 1e-72 AT3G27750 184 / 2e-58 EMBRYO DEFECTIVE 3123, unknown protein Lus10038297 [exp] 212 / 5e-69 AT3G27750 182 / 2e-57 EMBRYO DEFECTIVE 3123, unknown protein Lus10040756 [exp] 50 / 2e-07 AT3G46870 349 / 2e-122 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036049 [exp] 49 / 9e-07 AT1G62350 316 / 1e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000892 [exp] 47 / 3e-06 AT1G62350 318 / 3e-111 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G051400.1 pacid=42787036 polypeptide=Potri.003G051400.1.p locus=Potri.003G051400 ID=Potri.003G051400.1.v4.1 annot-version=v4.1 ATGGCTTCCTCCTCCTCCTACTTTCACTTAAACCTCACCACTCCACTTTTCCTTTCTCCAAAACTCAAGACCCTAAGCCCTACAAAAACCTCCACTTTCA CTCCCATACGCTGCGGTCCACGCTCCAAACGTGGACCTCTTGTCAGAGGCCGCATCTTAAGCACTGAAGCAATCCTAGCCATCCAATCCCTCAAACGCGC CGACAACAACAAATCTGAGTCCAGTAAGAAACTCCCAAACCTCGCGCGCATGATTAGGTCAGACCTCCTCTCTATCATTCGCGAGCTCCTACGTCAAGAC TTGTGCTCCCTCGCCCTTCAAGTCCTCTCAACCCTCCGATCAGAATACCCCGGCCAGATTGACCTTAATTTATACGCTGACGTCATCTTTGCGCTGTCCA GGAATAAATGTTTCGACGACATTGACCGTTTGATTGATGATTTGGAGGAAGGGGAGAGTTGGGTCAAGTGGGGAAGTGATCGGGGGCTGTTGAGGGTAGT CAGAGGGTTGGTTGAGGCTAGGAGGAAGGAATCAACGGTTAGAATTTGTGGGATGCTGCGGAGGAGTGGTTGTGGAGACACGTGGACGACTGATGAGTAT GTGGTTAAGGTGTTGCGCAGAGGGTTAAAGGAAATGGGTGAGATAGAGATGGCTAGTGAGGTTGATAGGGAATTTGGAAATGCTTGTAGGGGTAATTTGG AGAAATTTGTTATCTGA
AA sequence Show only first row Show all	>Potri.003G051400.1 pacid=42787036 polypeptide=Potri.003G051400.1.p locus=Potri.003G051400 ID=Potri.003G051400.1.v4.1 annot-version=v4.1 MASSSSYFHLNLTTPLFLSPKLKTLSPTKTSTFTPIRCGPRSKRGPLVRGRILSTEAILAIQSLKRADNNKSESSKKLPNLARMIRSDLLSIIRELLRQD LCSLALQVLSTLRSEYPGQIDLNLYADVIFALSRNKCFDDIDRLIDDLEEGESWVKWGSDRGLLRVVRGLVEARRKESTVRICGMLRRSGCGDTWTTDEY VVKVLRRGLKEMGEIEMASEVDREFGNACRGNLEKFVI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27750		EMB3123	EMBRYO DEFECTIVE 3123, unknown...		Potri.003G051400 [exp]	0	1
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Potri.003G132400 [exp]	1.00	0.9857
					Potri.005G112150 [exp]	1.73	0.9816
AT3G61320			Bestrophin-like protein (.1)		Potri.014G082900 [exp]	2.44	0.9763
AT1G69935		SHW1	short hypocotyl in white light...		Potri.008G190900 [exp]	3.16	0.9800
AT1G28140			unknown protein		Potri.001G100300 [exp]	3.16	0.9836
AT2G32480		ARASP	ARABIDOPSIS SERIN PROTEASE (.1...		Potri.014G154000 [exp]	4.47	0.9803
AT2G42975			unknown protein		Potri.002G058000 [exp]	6.00	0.9735
AT1G06040	CO	BBX24, STO	SALT TOLERANCE, B-box domain p...		Potri.007G130100 [exp]	7.34	0.9638
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Potri.001G110200 [exp]	9.89	0.9761
AT1G49620		ICN6, ICK5, KRP...	KIP-RELATED PROTEIN 7, Cyclin-...		Potri.009G103600 [exp]	10.09	0.9558	Pt-ICK5.1,7

Compare expression of checked genes

Potri.003G051400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.