Plant FIBer expression Database

TED3.1 (Potri.003G051500) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol TED3.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G79810 503 / 0 PEX2, TED3, ATPEX2 ARABIDOPSIS PEROXIN 2, Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.1), Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G186000
[exp]
612 / 0 AT1G79810 490 / 2e-175 ARABIDOPSIS PEROXIN 2, Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.1), Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037580
[exp]
530 / 0 AT1G79810 508 / 0.0 ARABIDOPSIS PEROXIN 2, Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.1), Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.2)
Lus10006832
[exp]
520 / 0 AT1G79810 508 / 0.0 ARABIDOPSIS PEROXIN 2, Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.1), Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0229 RING PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
CL0229 PF04757 Pex2_Pex12 Pex2 / Pex12 amino terminal region
Representative CDS sequence
>Potri.003G051500.1 pacid=42784840 polypeptide=Potri.003G051500.1.p locus=Potri.003G051500 ID=Potri.003G051500.1.v4.1 annot-version=v4.1
ATGGCTGCTCTTAATCTTCGACAACCGCCACCAGAGGATGAATGGGTTCACACTTATCTAAAATTGCTTCCTCAATGGAAACCTCTTGCTCTTTCTCACC
AGTCAATGATACCGATTTCAATATCTAGAGTTAATCAATTTGATGCTGCGAGATTGGACATTGAAATGTCAGCTATGTTAAAGGAACAATTGGTTAAGGT
CTTTTCTCTAATGAAGCCAGGGATGTTATTTCAATATGAGCCGGAACTTGATGCTTTCCTTGAGTTTCTCATTTGGAGGTTCTCTATCTGGGTAGATAAG
CCTACTCCAGGAAATGCTCTCATGGACCTGAGGTACAGAGATGAACGTGCAATGGAATCAAGAGGAAAAGTTAGAACAGGTTTGGAAGGACCTGGACTGA
CCATTGCACAGAAAATTTGGTATTGCATTGCCACTGTTGGTGGTCAGTACACCTGGGCTCGCTTACAGTCATTCTCTGCTTTTCGTAGATGGGGTGATTC
TGAACAGAGGCCACTGGCAAGGCGTGCGTGGATTTTGATACAACGTGTTGAGGGACTTTATAAAGCTGCTTCATTTGGCAACCTACTAATATTTCTTTAC
ACAGGACGGTTTAGAAACCTCATTGAAAGAGTCTTGCAAGCAAGGCTTGTCTACGGAAGCCCTAATATGAACCGAGCAGTTAGCTTTGAGTACATGAATC
GCCAGTTAGTGTGGAATGAATTTTCGGAGATGTTGCTGCTACTTCTACCTCTTCTTAACTCCTCGTCTGTTAAAAAATTTCTTGGCCCATTTTCAAAGGA
TAAATCTTCAAGCTCCAAAGTAGATGATGATACTTGTCCAATTTGCCAGGCAATTCCAACCATTCCATTTCTTTCTCTTCCCTGTCAGCACAGGTACTGC
TACTACTGCCTTAGAACACGATGTGCTGCAGCTCCATCATTCCGCTGTCCCAGATGTGGCGAGCCAGTGGTTGCTATGCAGCGCCATGGCGGTTTAGCTG
GTAATACAAATCCGAACCAATGA
AA sequence
>Potri.003G051500.1 pacid=42784840 polypeptide=Potri.003G051500.1.p locus=Potri.003G051500 ID=Potri.003G051500.1.v4.1 annot-version=v4.1
MAALNLRQPPPEDEWVHTYLKLLPQWKPLALSHQSMIPISISRVNQFDAARLDIEMSAMLKEQLVKVFSLMKPGMLFQYEPELDAFLEFLIWRFSIWVDK
PTPGNALMDLRYRDERAMESRGKVRTGLEGPGLTIAQKIWYCIATVGGQYTWARLQSFSAFRRWGDSEQRPLARRAWILIQRVEGLYKAASFGNLLIFLY
TGRFRNLIERVLQARLVYGSPNMNRAVSFEYMNRQLVWNEFSEMLLLLLPLLNSSSVKKFLGPFSKDKSSSSKVDDDTCPICQAIPTIPFLSLPCQHRYC
YYCLRTRCAAAPSFRCPRCGEPVVAMQRHGGLAGNTNPNQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G79810 PEX2, TED3, ATP... ARABIDOPSIS PEROXIN 2, Pex2/Pe... Potri.003G051500
[exp]
0 1 TED3.1
AT5G56760 SAT-52, AtSerat... SERINE ACETYLTRANSFERASE 52, s... Potri.013G109500
[exp]
1.00 0.9225 SAT.2
AT5G03905 Iron-sulphur cluster biosynthe... Potri.006G084300
[exp]
1.41 0.9122
AT4G35640 ATSERAT3;2 serine acetyltransferase 3;2 (... Potri.005G099700
[exp]
2.44 0.8888 SAT.4
AT1G26665 Mediator complex, subunit Med1... Potri.003G146900
[exp]
4.00 0.8687
Potri.006G029500
[exp]
4.58 0.9075
AT2G38610 RNA-binding KH domain-containi... Potri.019G132100
[exp]
6.00 0.8683
AT1G68140 Protein of unknown function (D... Potri.001G208800
[exp]
6.63 0.9012
AT2G45740 PEX11D peroxin 11D (.1.2.3) Potri.014G076400
[exp]
14.14 0.8846
AT5G06140 ATSNX1 ARABIDOPSIS THALIANA SORTING N... Potri.006G209600
[exp]
15.90 0.8777
AT1G80360 Pyridoxal phosphate (PLP)-depe... Potri.001G177000
[exp]
20.78 0.8574

Potri.003G051500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.