Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29100 197 / 5e-60 bHLH bHLH068 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G20100 169 / 9e-50 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G19500 122 / 5e-33 bHLH bHLH113 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G27660 125 / 1e-32 bHLH bHLH110 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G20640 125 / 2e-32 bHLH bHLH123 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G61660 117 / 4e-30 bHLH bHLH112 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT2G31730 108 / 6e-29 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G05710 102 / 2e-26 bHLH bHLH153 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT4G21340 100 / 1e-24 bHLH bHLH103, B70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G05170 99 / 2e-24 bHLH bHLH114 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G185900 [exp] 464 / 2e-166 AT4G29100 212 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.018G083700 [exp] 285 / 5e-95 AT4G29100 279 / 3e-91 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G029100 [exp] 135 / 7e-36 AT1G61660 216 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.011G033000 [exp] 134 / 1e-35 AT1G61660 216 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.005G230800 [exp] 133 / 1e-35 AT1G27660 247 / 3e-77 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G410600 [exp] 132 / 4e-35 AT3G20640 274 / 2e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G094300 [exp] 128 / 4e-35 AT3G19500 161 / 2e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G032400 [exp] 129 / 3e-34 AT1G27660 234 / 3e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G129500 [exp] 129 / 4e-34 AT3G20640 289 / 3e-93 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023669 [exp] 177 / 9e-53 AT2G20100 223 / 5e-69 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10038550 [exp] 140 / 1e-37 AT3G20640 231 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10013874 [exp] 135 / 4e-37 AT3G19500 151 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007613 [exp] 133 / 2e-36 AT1G61660 194 / 1e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10034940 [exp] 133 / 3e-36 AT4G29100 171 / 4e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018400 [exp] 130 / 2e-35 AT1G61660 195 / 3e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10010638 [exp] 125 / 2e-32 AT1G27660 180 / 1e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10025599 [exp] 109 / 3e-29 AT1G05710 169 / 8e-55 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10027064 [exp] 108 / 4e-29 AT1G05710 174 / 9e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10014279 [exp] 107 / 1e-25 AT5G44230 374 / 5e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G051600.4 pacid=42786584 polypeptide=Potri.003G051600.4.p locus=Potri.003G051600 ID=Potri.003G051600.4.v4.1 annot-version=v4.1 ATGGCAGGAAACCCTAGCTGGTGGAGCATGCATCCACCTTCACAGCAACCTTCTGCTTTGTTATCATCTTCTCCATCTAGCTACCCTTCCCAATATGTAC TTGGATCTTCTCCATTCCCTTTGAATTCTCTGCCTGATAACCAAGAGCTTCCACAGTCATGGAGCCAACTACTTTTGGGTGGTTCGTCAGGAGATGAAGA TAGGTACGGTCTGAGTCAATTTCAGCCTAAAAAGTTGGAAAATTGGGAAGACCAAATCTTAAATCCGTCTCCAAGTATTTCTTTAGATGCTGATGTAAAG CAAGAGGTTTCCCACAATAGCAACTTATATGGTCATGGGGAAGAAGACTTTCAGGCAGCTAGGCCCACAGCTTGGCCACAAGCGATGCCGGTCTCTTCCC CTAGGTCTTGCGTCACAAGTTTAAGTAGTAGTACTAGTATATTAGACTTCTCTTACAACAAGGCAGATGGGGCAAGTCAGCATCCAGATCAGTCATCTGA GTGTAACAGTACAGCCACAGGTGGAGTGTGTAAGAAGGCTAGGGTTCAGCCCTCTTCAAGCCAACCTCTTAAGGTGAGGAAGGAGAAGTTAGGTGATAGA ATAACAGCTCTTCACCAAATGGTTTCCCCTTTTGGAAAGACTGACACAGCTTCAGTCTTGTTAGAAGCTATTGGGTATATCAGATTCCTTCAGGGTCAAA TTGAGGCTCTTAGCTCCCCTTACATGGGCACTGCCTCGCCAAATATGAGGAACCAGCAACAATCTGTTCAAGAAGAAAGAAATAGTGCATTTTCTGAAGA CATGCGTCAGGATAATCAAGACCAGCCAAAGGACTTGAGGAGTAGAGGACTGTGCTTGGTTCCCGTGTCCTGTACTCAGCATGTTGGAAGTGACAATGGT GCCGATTACTGGGCTCCCGCTATCGGAGGAGGGTTTTGA
AA sequence Show only first row Show all	>Potri.003G051600.4 pacid=42786584 polypeptide=Potri.003G051600.4.p locus=Potri.003G051600 ID=Potri.003G051600.4.v4.1 annot-version=v4.1 MAGNPSWWSMHPPSQQPSALLSSSPSSYPSQYVLGSSPFPLNSLPDNQELPQSWSQLLLGGSSGDEDRYGLSQFQPKKLENWEDQILNPSPSISLDADVK QEVSHNSNLYGHGEEDFQAARPTAWPQAMPVSSPRSCVTSLSSSTSILDFSYNKADGASQHPDQSSECNSTATGGVCKKARVQPSSSQPLKVRKEKLGDR ITALHQMVSPFGKTDTASVLLEAIGYIRFLQGQIEALSSPYMGTASPNMRNQQQSVQEERNSAFSEDMRQDNQDQPKDLRSRGLCLVPVSCTQHVGSDNG ADYWAPAIGGGF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Potri.003G051600 [exp]	0	1
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Potri.018G083700 [exp]	2.64	0.7739
AT1G33060	NAC	ANAC014	NAC 014 (.1.2)		Potri.002G154100 [exp]	5.09	0.7174
AT5G09460	bHLH	bHLH143	sequence-specific DNA binding ...		Potri.017G048000 [exp]	10.24	0.7001
AT1G21890			nodulin MtN21 /EamA-like trans...		Potri.002G085100 [exp]	12.60	0.7109
AT4G32272			Nucleotide/sugar transporter f...		Potri.018G127400 [exp]	17.23	0.6798
AT2G32010		CVL1	CVP2 like 1 (.1.2)		Potri.010G084300 [exp]	18.22	0.7030
AT4G08900		ARGAH1	arginine amidohydrolase 1, arg...		Potri.014G067700 [exp]	18.54	0.6851	Pt-PAG1.3
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Potri.003G056200 [exp]	19.89	0.6986	SULTR3.6
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Potri.012G037100 [exp]	21.33	0.6663
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Potri.012G047200 [exp]	26.38	0.6419	PIN7,Pt-PIN1.2

Compare expression of checked genes

Potri.003G051600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.