Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16190 269 / 7e-93 Isochorismatase family protein (.1) AT5G23220 49 / 4e-07 NIC3 nicotinamidase 3 (.1) AT5G23230 47 / 1e-06 NIC2 nicotinamidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G003300 [exp] 44 / 1e-05 AT5G23230 303 / 4e-106 nicotinamidase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037581 [exp] 298 / 2e-104 AT3G16190 298 / 2e-104 Isochorismatase family protein (.1) Lus10006833 [exp] 296 / 1e-103 AT3G16190 295 / 4e-103 Isochorismatase family protein (.1) Lus10040988 [exp] 40 / 0.0005 AT5G23230 288 / 2e-100 nicotinamidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00857 [poplar] [flax] Isochorismatase Isochorismatase family
Representative CDS sequence Show only first row Show all	>Potri.003G051700.2 pacid=42786372 polypeptide=Potri.003G051700.2.p locus=Potri.003G051700 ID=Potri.003G051700.2.v4.1 annot-version=v4.1 ATGAGCATGGCAGATAAATGGAACCAAACTGCTCTATTAGTCATTGACATGCAGAATGATTTTATACTGGAGGATGGATTGATGAAAGTGAATGGAGGCA AAGCCATTGTCCCAAATGTGATCAAAGCTGTTGATATTGCTAGGCAGCGTGGCATCCTTGTTGTCTGGGTTGTCCGTGAACATGATCCACAAGGGAGAGA TGCCGAACTCTTTCGCCGACATTTGTACTCTCCAGGAAATGTGGGTCCCACCTCGAAGGGAAGTGTGGGAGCAGAACTGGTTGATGGTCTTGTAATCAAA GAAGGGGATTATAAGTTGGTGAAGACACGTTTCAGTGCATTCTTTGCTACTCATCTTCATTCATTTCTGCGTACTGAGGGAATTAAGAGTTTAGTAATTT CGGGGGTTCAAACTCCAAATTGCGTAAGGCAGACTGTCTTTGATGCGGTAGCTCTGGATTATCAACCTGTTACTGTTATTGTTGATGCCACCGCTGCTGC TACACCTGACATACATGATGCCAATATTTCTGACATGAAAAATATAGGAGTTGCGACCCCAACATTGCAGGAATGGTGTGGTTCTGGTGCTTGA
AA sequence Show only first row Show all	>Potri.003G051700.2 pacid=42786372 polypeptide=Potri.003G051700.2.p locus=Potri.003G051700 ID=Potri.003G051700.2.v4.1 annot-version=v4.1 MSMADKWNQTALLVIDMQNDFILEDGLMKVNGGKAIVPNVIKAVDIARQRGILVVWVVREHDPQGRDAELFRRHLYSPGNVGPTSKGSVGAELVDGLVIK EGDYKLVKTRFSAFFATHLHSFLRTEGIKSLVISGVQTPNCVRQTVFDAVALDYQPVTVIVDATAAATPDIHDANISDMKNIGVATPTLQEWCGSGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16190			Isochorismatase family protein...		Potri.003G051700 [exp]	0	1
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Potri.012G141000 [exp]	13.41	0.8734
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Potri.005G246100 [exp]	16.24	0.9017	Pt-PETE.1
AT5G07900			Mitochondrial transcription te...		Potri.014G133200 [exp]	16.61	0.9083
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.017G030400 [exp]	18.41	0.9077
AT4G24700			unknown protein		Potri.012G086000 [exp]	18.49	0.8931
AT5G07900			Mitochondrial transcription te...		Potri.004G013000 [exp]	24.55	0.8900
AT4G25130		PMSR4	peptide met sulfoxide reductas...		Potri.015G112268 [exp]	33.39	0.8954
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Potri.011G130300 [exp]	37.30	0.8162
AT3G10620		ATNUDX26	nudix hydrolase homolog 26 (.1...		Potri.008G017900 [exp]	38.88	0.8754
AT4G29400			Protein of unknown function (D...		Potri.014G148300 [exp]	39.39	0.8907

Compare expression of checked genes

Potri.003G051700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.