Plant FIBer expression Database

Potri.003G052100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G79830 944 / 0 GC5 golgin candidate 5 (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G185050
[exp]
1398 / 0 AT1G79830 986 / 0.0 golgin candidate 5 (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011437
[exp]
940 / 0 AT1G79830 949 / 0.0 golgin candidate 5 (.1.2.3.4)
Lus10037556
[exp]
938 / 0 AT1G79830 910 / 0.0 golgin candidate 5 (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF12325 TMF_TATA_bd TATA element modulatory factor 1 TATA binding
PF12329 TMF_DNA_bd TATA element modulatory factor 1 DNA binding
Representative CDS sequence
>Potri.003G052100.1 pacid=42785164 polypeptide=Potri.003G052100.1.p locus=Potri.003G052100 ID=Potri.003G052100.1.v4.1 annot-version=v4.1
ATGGCTTGGTTTAGCGGGAAAGTCTCTCTGGGGAACTTCCCGGATCTAGCAGGAGCGGTTAATAAGCTGAGCGAGAGCGTCAAGAATATCGAGAAGAATT
TCGATACTGCTCTTGGTTTTGAAGATAAATCTGATTCTAGTAGCACCACTGAAGCTTCGGGATTATGGCCGGTAATGTCCTTTATGGGGAACAAAAGCGA
GGATAGTACTGATGAATCGTCAGGGAAAACTGTATCTCCACAGAAATTGTCTACTGTTGAGGAGAAAGAATCTCAAAATTCTGACACCCAACAAACCACA
TCTGCTGAAGAAAATCAAGTGCTCGAGAGGAAAAAAGATGCTGAGCATCCAGAGATTGCTGAGAAAAAAGATGATGTCATTTCAGATACTGGCAAAGCTG
AACTTGAATCTGAAATTCAATCAGAGACTAAGGCTGTTGAACCTCCTGAGCCAGTTGTTCATGATGTTAAAGTACCAGAATCAGTTGATGATGTGCAGGG
AAAAGAGATTTCAGAGGAGGGCTGTGCTGAAAATTTAGATACATTGGAGGTCAGATCAGAAGCTTCCAGGGTTGATGAAGTTGAGGCTCCTTCCATCTTG
CATGATGAGTCACATAATGTGTCTCATACTCCTGATAGCACAGATGAACAAGAGGCACAAGCTGAGGAGACTGTAGAACGAAGTTCTACTATTCAAGCTG
AGGTATCAAACGAACCGCAACCTGAGGCATTGAATGATGTGCAAGCTCAGGCATCAACTGATATCCTAGCTGAGGCATCAAGTGATACCCGAGCTGGAGC
TGTGCTTGATTCATCCAGTTCACAGCCTGTTAGTGCTGAAGTGAGTGAAATGGTTCATGAATTTTCCCTGTCCGATGCATCGCCCCTAGATGAGGCTTCA
GAAATTGTTTCTGGATCGGTTTCCCAGGCAGATGATGTCCACAATCAGACAGTTGGAGGGGACAAGCGAGTCAATGATGGTGAAATTGACATTAAAGATC
AACACTTGAGTTTGAGGTCGAATATATCAGACTCTATAGATTCCACGCTTGAACTAGAGAAGGTGAAGACTGAGATGAAAATGATGGAAACTGCACTACA
AGGTGCTGCAAGGCAAGCTCAGGCGAAGGCTGATGAGATTGCGAAGTTGATGAATGAAAATGAGCACCTGAAAATTGTTATTGAGGAATTGAAGAGAAAA
TCTAATGATGCAGAAATTGAGTCTTTGAGAGAGGAATACCATCAAAGGGTTGCAACTCTTGAAAGAAAGGTCTATGCTCTTACAAAGGAAAGAGATACAC
TCAGGAGAGAGCATAATAAAAAAAGTGATGCAGCTGCTCTTCTGAAGGAAAAGGATGAAATCATTAATCAGGTTATGGCTGAAGGTGAAGAGCTTTCAAA
AAAGCAGGCTGCTCAAGAATCTACAATTAGAAAATTAAGAGCTCAGATTAGAGAACTTGAAGAAGAAAAGAAAGGTTTGATGACCAAAGTTCAGGTGGAA
GAAAATAAAGTAGAGAGTATAAAAAAGGACAAGACAGCTACAGAGAATTTGCTGCAAGAAACAATAGAAAAACACCAAGCAGAGCTTTCAGCGCAGAAAA
TTTATTATACTAATGCCTTATCTGCGGCCAAGGAGGCTGAAGCATTAGCAGAGGCGCGGGTTAATAATGAAGCCAGAACCGAATTAGAGAGTCGTCTAAG
AGAAGCAGAGGAACGCGAGACTATGCTAGTTCAGGCACTTGAAGAATTAAGACAAACCTTGACTAGAAAGGAGCAGCAGGCCGTTTTTAGAGAGGAAATG
CTACGCAGGGACATTGAAGATCTTCAAAAACGTTATCAAGCAAGTGAGCGCCGTTGTGAGGAGTTGATTACTCAAGTTCCAGATTCTACTAGGCCTCTCC
TAAGGCAGATTGAAGCCATGCAGGAAACAACAGCAAGAAGGGCAGAGGCCTGGGCTGCTGTGGAGAGATCTCTAAACTCTCGACTACAGGAAGCAGAAGC
GAAAGCTGCTGACGCTGAGGAAAGAGAGCGTTCTGTGAATGAACGCTTGTCTCAAACCTTATCTCGAATTAATGTTCTTGAAGCACAGATTTCTTGTCTC
AGGTCTGAACAAACACAGTTAAGTAGGTCCCTTGAAAAGGAGAGGCAGAGAGCAGCTGAAAACAAGCAGGAATACCTTGCAGCCAAGGAGGAAGCTGACA
CTCAAGAAGGTCGTGCAAACCAACTTGAAGGACAAATTAAGGAACTGAGGCAGAAACACAAGGAAGAGTTACAAGATGCACTAATAAACCGAGAACTTCT
ACAACAGGAAATTGAAAGAGAGAAAGCTGCTCGGTTGGAGTTGGAAAGGACAGCTCACATCCATTCTGCTTCTGCATCTGATAAAACTCCTATTGCAAGG
AGCAACTCTGCTTTCGAGAATGGAAACTTAACCCGAAAGCTCTCCAGTGCTAGTAGCCTGGGCAGCATTGAGGAGAGCTATTTTCTGCAAGCATCTTTAG
ACACATCTGACAGTCTTTCTGAACGGAGGAATCCTGGAGAGGCAACCATGAGTCCTTACTACATGAAGAGCATGACACCTAGTGCTTTCGAATCTGCCCT
TCGTCAGAAAGAGGGTGAACTTGCATCATATATGTCTCGTTTGGCATCCATGGAATCTATCCGTGACTCTCTCGCAGAAGAGTTGGTCAAAATGACAGCA
CAGTGTGAGAAATTACAGGCAGAGTCTGCCCTTTTGCCTGGTGTACGGGCAGAACTAGATGCACTGAGGAGAAGGCACTCTGCTGCCCTGGAGTTAATGG
GTGAACGTGATGAGGAATTGGAGGAACTTCGTGCTGATATTGTAGACTTGAAAGAAATGTACAGAGAGCAAGTAAATTTGCTTGTGAATAAGATCCAAAT
ATTAAGTACATCCTCTGGCAATGCCTGA
AA sequence
>Potri.003G052100.1 pacid=42785164 polypeptide=Potri.003G052100.1.p locus=Potri.003G052100 ID=Potri.003G052100.1.v4.1 annot-version=v4.1
MAWFSGKVSLGNFPDLAGAVNKLSESVKNIEKNFDTALGFEDKSDSSSTTEASGLWPVMSFMGNKSEDSTDESSGKTVSPQKLSTVEEKESQNSDTQQTT
SAEENQVLERKKDAEHPEIAEKKDDVISDTGKAELESEIQSETKAVEPPEPVVHDVKVPESVDDVQGKEISEEGCAENLDTLEVRSEASRVDEVEAPSIL
HDESHNVSHTPDSTDEQEAQAEETVERSSTIQAEVSNEPQPEALNDVQAQASTDILAEASSDTRAGAVLDSSSSQPVSAEVSEMVHEFSLSDASPLDEAS
EIVSGSVSQADDVHNQTVGGDKRVNDGEIDIKDQHLSLRSNISDSIDSTLELEKVKTEMKMMETALQGAARQAQAKADEIAKLMNENEHLKIVIEELKRK
SNDAEIESLREEYHQRVATLERKVYALTKERDTLRREHNKKSDAAALLKEKDEIINQVMAEGEELSKKQAAQESTIRKLRAQIRELEEEKKGLMTKVQVE
ENKVESIKKDKTATENLLQETIEKHQAELSAQKIYYTNALSAAKEAEALAEARVNNEARTELESRLREAEERETMLVQALEELRQTLTRKEQQAVFREEM
LRRDIEDLQKRYQASERRCEELITQVPDSTRPLLRQIEAMQETTARRAEAWAAVERSLNSRLQEAEAKAADAEERERSVNERLSQTLSRINVLEAQISCL
RSEQTQLSRSLEKERQRAAENKQEYLAAKEEADTQEGRANQLEGQIKELRQKHKEELQDALINRELLQQEIEREKAARLELERTAHIHSASASDKTPIAR
SNSAFENGNLTRKLSSASSLGSIEESYFLQASLDTSDSLSERRNPGEATMSPYYMKSMTPSAFESALRQKEGELASYMSRLASMESIRDSLAEELVKMTA
QCEKLQAESALLPGVRAELDALRRRHSAALELMGERDEELEELRADIVDLKEMYREQVNLLVNKIQILSTSSGNA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G79830 GC5 golgin candidate 5 (.1.2.3.4) Potri.003G052100
[exp]
0 1
AT5G25510 Protein phosphatase 2A regulat... Potri.018G034200
[exp]
2.00 0.9228
AT2G41740 ATVLN2, VLN2 villin 2 (.1) Potri.006G050200
[exp]
3.87 0.9213 VLN2.1
AT3G23980 KOS1, BLI KOLD SENSITIV 1, BLISTER (.1) Potri.010G062000
[exp]
4.47 0.9004
AT4G00750 S-adenosyl-L-methionine-depend... Potri.014G075700
[exp]
5.65 0.9196
AT5G56510 APUM12 pumilio 12 (.1) Potri.003G222300
[exp]
5.91 0.9164
AT5G53340 Galactosyltransferase family p... Potri.003G136000
[exp]
7.48 0.9219
AT1G71070 Core-2/I-branching beta-1,6-N-... Potri.008G006500
[exp]
9.48 0.9195
AT1G17720 ATBBETA, ATB BE... Protein phosphatase 2A, regula... Potri.018G055001
[exp]
10.09 0.8880
AT2G38650 GAUT7, LGT7 LIKE GLYCOSYL TRANSFERASE 7, g... Potri.016G143966
[exp]
13.07 0.8787
AT1G13180 ATARP3, DIS1 DISTORTED TRICHOMES 1, ARABIDO... Potri.008G182700
[exp]
13.19 0.9183

Potri.003G052100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.