Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29000 49 / 6e-08 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT2G20110 49 / 7e-08 CPP Tesmin/TSO1-like CXC domain-containing protein (.1.2) AT5G25790 44 / 4e-06 CPP Tesmin/TSO1-like CXC domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G184800 [exp] 66 / 8e-14 AT2G20110 286 / 3e-90 Tesmin/TSO1-like CXC domain-containing protein (.1.2) Potri.006G160400 [exp] 51 / 8e-09 AT4G29000 518 / 2e-178 Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.018G083000 [exp] 51 / 1e-08 AT4G29000 410 / 9e-139 Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.018G039300 [exp] 41 / 3e-05 AT2G20110 269 / 2e-81 Tesmin/TSO1-like CXC domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023656 [exp] 51 / 1e-08 AT4G29000 491 / 2e-168 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10009494 [exp] 46 / 9e-07 AT4G29000 335 / 2e-106 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10011693 [exp] 44 / 3e-06 AT4G29000 330 / 3e-105 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10043225 [exp] 44 / 5e-06 AT4G29000 520 / 2e-179 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10011103 [exp] 43 / 7e-06 AT4G29000 463 / 8e-157 Tesmin/TSO1-like CXC domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G052150.1 pacid=42785886 polypeptide=Potri.003G052150.1.p locus=Potri.003G052150 ID=Potri.003G052150.1.v4.1 annot-version=v4.1 ATGGGCAGGTACTGTGGGCGCTTTGTTTCTGGATCATATTGTGAGGAGTGCAGTTGTGCTGATTGTCATAATAATGTTGAGAATGAGGGTGTGAGGAGAG AAGCTACTGAATGTGTCAACTGCAAGAATTTGGAAGGAAGCGAGCTGGGAATGGATGTTCTATGGGGAAATCATGGTAAGACCAAAGCCTGCATTCAGCA GGCAAAAGCTGCTTCATCTGATGCTATTGTAACCTCGAGCCATATCTTCTCTCAGGAATCCAAGAAAATAATGAAGAAGATTTCAAGAACTATTTGA
AA sequence Show only first row Show all	>Potri.003G052150.1 pacid=42785886 polypeptide=Potri.003G052150.1.p locus=Potri.003G052150 ID=Potri.003G052150.1.v4.1 annot-version=v4.1 MGRYCGRFVSGSYCEECSCADCHNNVENEGVRREATECVNCKNLEGSELGMDVLWGNHGKTKACIQQAKAASSDAIVTSSHIFSQESKKIMKKISRTI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Potri.003G052150 [exp]	0	1
AT4G24480			Protein kinase superfamily pro...		Potri.005G153100 [exp]	20.00	0.6298
					Potri.010G019550 [exp]	22.38	0.6458
					Potri.003G058551 [exp]	24.14	0.6213
AT1G02460			Pectin lyase-like superfamily ...		Potri.002G190600 [exp]	26.26	0.6345
					Potri.001G093650 [exp]	65.95	0.5695
AT5G24040			Protein of unknown function (D...		Potri.009G078900 [exp]	106.88	0.5329
AT1G14750		SDS	SOLO DANCERS, Cyclin family pr...		Potri.010G103800 [exp]	189.92	0.5016
AT1G07630		PLL5	pol-like 5 (.1)		Potri.009G030600 [exp]	196.73	0.5053

Compare expression of checked genes

Potri.003G052150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.