Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GL2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79840 949 / 0 HD GL2 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) AT4G00730 613 / 0 HD AHDP, ANL2 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT4G04890 611 / 0 HD PDF2 protodermal factor 2 (.1) AT4G21750 605 / 0 HD ATML1 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) AT1G05230 593 / 0 HD HDG2 homeodomain GLABROUS 2 (.1.2.3.4) AT3G61150 536 / 2e-180 HD HD-GL2-1, HDG1 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1) AT5G52170 495 / 6e-166 HD HDG7 homeodomain GLABROUS 7 (.1) AT1G17920 494 / 1e-165 HD HDG12 homeodomain GLABROUS 12 (.1) AT1G73360 493 / 1e-164 HD ATHDG11, HDG11, EDT1 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) AT2G32370 472 / 2e-156 HD HDG3 homeodomain GLABROUS 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G184100 [exp] 1317 / 0 AT1G79840 946 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) Potri.014G075200 [exp] 657 / 0 AT4G00730 1045 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G154700 [exp] 650 / 0 AT4G00730 1057 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.002G230200 [exp] 625 / 0 AT1G05230 1159 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.011G025000 [exp] 625 / 0 AT4G21750 1164 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.014G152000 [exp] 625 / 0 AT1G05230 1179 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Potri.004G020400 [exp] 621 / 0 AT4G04890 1185 / 0.0 protodermal factor 2 (.1) Potri.012G139300 [exp] 571 / 0 AT4G00730 838 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Potri.015G141800 [exp] 563 / 0 AT4G00730 829 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037554 [exp] 975 / 0 AT1G79840 846 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) Lus10011440 [exp] 952 / 0 AT1G79840 827 / 0.0 GLABRA 2, HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain (.1.2) Lus10006765 [exp] 622 / 0 AT4G21750 1152 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10007650 [exp] 620 / 0 AT4G04890 1121 / 0.0 protodermal factor 2 (.1) Lus10020059 [exp] 617 / 0 AT4G21750 1130 / 0.0 MERISTEM LAYER 1, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10039667 [exp] 605 / 0 AT1G05230 1142 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10027175 [exp] 602 / 0 AT1G05230 1138 / 0.0 homeodomain GLABROUS 2 (.1.2.3.4) Lus10036567 [exp] 553 / 0 AT4G00730 979 / 0.0 ANTHOCYANINLESS 2, ARABIDOPSIS THALIANA HOMEODOMAIN PROTEIN, Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (.1.2) Lus10031321 [exp] 550 / 0 AT1G73360 920 / 0.0 ENHANCED DROUGHT TOLERANCE 1, homeodomain GLABROUS 11 (.1) Lus10027437 [exp] 492 / 7e-164 AT3G61150 715 / 0.0 HOMEODOMAIN-GLABRA2 1, homeodomain GLABROUS 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0209 [poplar] [flax] Bet_v_1_like PF01852 [poplar] [flax] START START domain
Representative CDS sequence Show only first row Show all	>Potri.003G052400.1 pacid=42786502 polypeptide=Potri.003G052400.1.p locus=Potri.003G052400 ID=Potri.003G052400.1.v4.1 annot-version=v4.1 ATGGGCGTCGACATGTCTAATCCACCCAATTCTCATATCAAGGACTTCTTTGCCTCTCCTGCTCTTTCTCTTAGTCTTGCTGGAATATTCCGCGGCGCAA ATGTGAGTCATTCTGCAGCAGCGGGTAGCGTGGAGGTGGAGGAGGGGGATGAAGGGAGTGGAGGAGGAAGAAGAGAAGAAACCGTGGAAATTAGTAGTGA GACCTCAGGGCCTATGAGATCAAGATCAGATGATGATCTTGAAGGTGAAGGAGAGCATGATGAGGATGATGGTGATGGTGATGGTGATGATGATGACAAA AACAAGAAGAAAAAAAGAAAGAAATACCATAGACATACCGCTGAGCAAATCAGAGAAATGGAAGCGCTATTTAAAGAGTCTCCTCATCCAGATGAGAAGC AGAGGCAGCAATTAAGCAAGCAACTAGGCCTTGCTCCTAGGCAAGTCAAGTTTTGGTTCCAAAATCGTCGTACTCAAATCAAGGCCATACAAGAGCGCCA TGAAAATTCTCTGCTGAAAACTGAAATGGATAAACTCCGAGAAGAAAACAAGACCATGAGGGAGACCATCAACAAAGCTTGCTGTCCAAATTGTGGCACC GCTACCACCAGTAGAGGCACTGCCTTAACAACCGAGGAACAGCAATTACGTATCGAAAATGCAAAACTCAAAGCCGAGGTAGAAAAACTTCGAGTGGTTA TAGGAAAATATAGTCCAGGGGCAACAGCCTCATGTTCAGCTGAAAATGATCAAGAGAATAGAAGTTCACTGGATTTTTACACTGGAATTTTCGGACTTGA CAAGACAAGAATCACGGAGATCGCTAATCAAGCAATGGAAGAGCTCAAGAAAATGGCTACTGCGGGCGAGCCACTTTGGATTCGAAGTGTTGAGACAGGT CGTGAAATTCTTAATTACGATGAGTACACGAAAGAGTTTGGTTCTGAAAATTCAAGCAATAATGGAAGGCCGAAGAGATCCATTGAGGCTTCAAGAGAGA CCAGGGTTGTGTTTGTGGATCTCCCAAGGCTAGTTCAAAGTTTTATGGATGTGAATCGGTGGAAGGAAATGTTTCCATGCTTGATTTCAAAGGCGGCCAC TGTTGATGTTATCTGCAATGGTGAAGGTGCAAATAGAAATGGGGCAGTGCAATTGATGTTTGCTGAGGTCCAGATGCTTACACCCATGGTGCCTACCAGA GAAGTTTATTTTGTCAGATATTGCAAGCAGCTTAACGCAGAACAATGGGCCATTGTTGATGTTTCTATTGACAAAGTTGAAGACAATATTGATGCTTCAC TCGTTAAATGCAGAAAACGCCCCTCTGGTTGCATCATTGAGGATAAATCAAATGGCCATTGTAAGGTGATCTGGGTAGAACACCTGGAATGCCAGAAAAG CGCAGTTCATACCATGTTCCGGACAGTCGTTCATAGTGGCCTAGCCTTTGGAGCAAGGCATTGGATTGCAACATTGCAACTCCAATGTGAACGGCTTGTT TTCTTCATGGCAACCAACGTTCCCACTAAGGATTCAACTGGTGTTGCTACACTAGCTGGAAGGAAAAGCATTCTGAAACTGGCACAAAGAATGACATGGA GCTTTTGTCGAGCAATCGGAGCATCAAGCTATCACACATGGAGCAAGGTATCAAGCAAAACAGGAGAAGATATAAGGATTTCGTCTAGGAAAAACTTAAA TGAACCTGGTGAACCTGTTGGATTGATCTTGTGTGCAGTTTCTTCTGTATGGTTGCCTGTCCCTCCGCATATTCTGTTTGATTTCTTAAGAGACGAAGCT CGTAGAAATGAGTGGGATATCATGTCAAATGGAGGACCTGTACAAGCCACTGCAAACTTAGCCAAAGGACAAGATAGAGGCAATGCAGTAACTATTCTAA AGATGAAATCTAAAGAAAACAATATGTGGGTACTCCAAGATAGCTGCACGAATGCTTATGAATCCATGGTAATTTATGCTCCAGTGGACACTAATGGAAT GCAATCTGTGATTAATGGATGTGATTCAAGCAACCTAGCAATATTACCTTCAGGATTCTCAATTCTTCCTGATGGACACGAATCAAGACCATTAGTGATC ACTTCTAGGCAAGAGGAGAAGAGCACCGAAGGGGGATCGTTGCTAACAATAGCATTCCAAATCCTAACGAATACCTCTCCCACAGCCAAACTAACCATGG AATCTGTGGAATCTGTTAACGCACTTATATCATGCACATTGAAAAACATCAAGACAAGCTTGCAATGTGAAGATAGTTGA
AA sequence Show only first row Show all	>Potri.003G052400.1 pacid=42786502 polypeptide=Potri.003G052400.1.p locus=Potri.003G052400 ID=Potri.003G052400.1.v4.1 annot-version=v4.1 MGVDMSNPPNSHIKDFFASPALSLSLAGIFRGANVSHSAAAGSVEVEEGDEGSGGGRREETVEISSETSGPMRSRSDDDLEGEGEHDEDDGDGDGDDDDK NKKKKRKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKTEMDKLREENKTMRETINKACCPNCGT ATTSRGTALTTEEQQLRIENAKLKAEVEKLRVVIGKYSPGATASCSAENDQENRSSLDFYTGIFGLDKTRITEIANQAMEELKKMATAGEPLWIRSVETG REILNYDEYTKEFGSENSSNNGRPKRSIEASRETRVVFVDLPRLVQSFMDVNRWKEMFPCLISKAATVDVICNGEGANRNGAVQLMFAEVQMLTPMVPTR EVYFVRYCKQLNAEQWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSAVHTMFRTVVHSGLAFGARHWIATLQLQCERLV FFMATNVPTKDSTGVATLAGRKSILKLAQRMTWSFCRAIGASSYHTWSKVSSKTGEDIRISSRKNLNEPGEPVGLILCAVSSVWLPVPPHILFDFLRDEA RRNEWDIMSNGGPVQATANLAKGQDRGNAVTILKMKSKENNMWVLQDSCTNAYESMVIYAPVDTNGMQSVINGCDSSNLAILPSGFSILPDGHESRPLVI TSRQEEKSTEGGSLLTIAFQILTNTSPTAKLTMESVESVNALISCTLKNIKTSLQCEDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79840	HD	GL2	GLABRA 2, HD-ZIP IV family of ...		Potri.003G052400 [exp]	0	1	GL2.1
AT5G57630		CIPK21, SnRK3.4	SNF1-RELATED PROTEIN KINASE 3....		Potri.006G171400 [exp]	3.74	0.8737
AT2G47710			Adenine nucleotide alpha hydro...		Potri.002G193800 [exp]	5.74	0.8162
AT1G79840	HD	GL2	GLABRA 2, HD-ZIP IV family of ...		Potri.001G184100 [exp]	5.74	0.8603	GL2.2
AT5G08240			unknown protein		Potri.007G071900 [exp]	7.21	0.8384
AT5G01850			Protein kinase superfamily pro...		Potri.016G134900 [exp]	8.00	0.8238
AT2G30620			winged-helix DNA-binding trans...		Potri.013G042700 [exp]	11.48	0.8141	HON902
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Potri.003G109300 [exp]	13.11	0.7616
					Potri.001G078300 [exp]	13.22	0.8356
					Potri.007G048600 [exp]	14.00	0.8255
AT3G60380			unknown protein		Potri.002G136600 [exp]	15.00	0.8129

Compare expression of checked genes

Potri.003G052400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.