Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PSAH.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52230 163 / 2e-52 PSAH2, PSAH-2, PSI-H PHOTOSYSTEM I SUBUNIT H-2, photosystem I subunit H2 (.1) AT3G16140 161 / 6e-52 PSAH-1 photosystem I subunit H-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025798 [exp] 155 / 3e-49 AT1G52230 215 / 5e-73 PHOTOSYSTEM I SUBUNIT H-2, photosystem I subunit H2 (.1) Lus10035864 [exp] 153 / 2e-48 AT1G52230 209 / 1e-70 PHOTOSYSTEM I SUBUNIT H-2, photosystem I subunit H2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03244 [poplar] [flax] PSI_PsaH Photosystem I reaction centre subunit VI
Representative CDS sequence Show only first row Show all	>Potri.003G052500.1 pacid=42784894 polypeptide=Potri.003G052500.1.p locus=Potri.003G052500 ID=Potri.003G052500.1.v4.1 annot-version=v4.1 ATGGCATCACTAGCAACCTTTGCTGCAGTGCAACCGGCCACCATCAAAGGCCTTGGTGGTAGCTCCCTCAGTGGAACCAAGCTCCATGTTAAACCATCTC GCCAGGGCTTAAGACCCAAAAGCTTGAGGAGTGGTGCTGTGGTGGCCAAGTATGGTGACAAGAGTGTCTACTTTGATTTGGAGGATTTGGGCAACACTAC TGGGCAATGGGACTTGTATGGATCTGATGCACCTTCACCATACAACCCTCTCCAGAGCAAATTCTTTGAGACATTTGCAGCTCCATTCACCAAGAGAGGA TTGTTGCTCAAGTTCTTGATATTGGGAGGCGGCTCCACCCTCGCTTATTTTAGTGCTACAGCTTCTGGTGACATTCTACCAATCAAGAAGGGTCCACAAC TTCCACCGAAGCTTGGGCCTCGTGGCAAACTCTAA
AA sequence Show only first row Show all	>Potri.003G052500.1 pacid=42784894 polypeptide=Potri.003G052500.1.p locus=Potri.003G052500 ID=Potri.003G052500.1.v4.1 annot-version=v4.1 MASLATFAAVQPATIKGLGGSSLSGTKLHVKPSRQGLRPKSLRSGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRG LLLKFLILGGGSTLAYFSATASGDILPIKKGPQLPPKLGPRGKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52230		PSAH2, PSAH-2, ...	PHOTOSYSTEM I SUBUNIT H-2, pho...		Potri.003G052500 [exp]	0	1	Pt-PSAH.1
AT2G30570		PSBW	photosystem II reaction center...		Potri.005G218800 [exp]	1.00	0.9910
AT2G39470		PnsL1, PPL2	Photosynthetic NDH subcomplex...		Potri.010G210000 [exp]	1.41	0.9811
AT3G46780		PTAC16	plastid transcriptionally acti...		Potri.001G244800 [exp]	2.44	0.9788
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Potri.007G033700 [exp]	5.29	0.9787	PSBO.2
AT4G23890		NdhS, CRR31	NADH dehydrogenase-like comple...		Potri.003G140400 [exp]	5.47	0.9779
AT4G26150	GATA	GATA22, CGA1, G...	GNC-LIKE, GATA TRANSCRIPTION F...		Potri.018G053600 [exp]	6.00	0.9745
AT4G27220			NB-ARC domain-containing disea...		Potri.011G124212 [exp]	6.70	0.9728
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Potri.011G003800 [exp]	7.74	0.9783
AT4G02530			chloroplast thylakoid lumen pr...		Potri.018G129600 [exp]	8.48	0.9766
AT4G27220			NB-ARC domain-containing disea...		Potri.011G124366 [exp]	8.48	0.9701

Compare expression of checked genes

Potri.003G052500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.