Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79860 638 / 0 ATROPGEF12, ROPGEF12, MEE64 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) AT1G52240 596 / 0 PIRF1, ATROPGEF11, ROPGEF11 phytochrome interacting RopGEF 1, RHO guanyl-nucleotide exchange factor 11 (.1.2) AT4G13240 594 / 0 ATROPGEF9, ROPGEF9 RHO guanyl-nucleotide exchange factor 9 (.1) AT3G24620 589 / 0 ATROPGEF8, ROPGEF8 RHO guanyl-nucleotide exchange factor 8 (.1) AT3G16130 526 / 0 PIRF2, ATROPGEF13, ROPGEF13 phytochrome interacting RopGEF 2, RHO guanyl-nucleotide exchange factor 13 (.1) AT5G19560 514 / 3e-179 ATROPGEF10, ROPGEF10 ARABIDOPSIS THALIANA ROP UANINE NUCLEOTIDE EXCHANGE FACTOR 10, ROP uanine nucleotide exchange factor 10 (.1) AT5G02010 405 / 4e-136 ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 (.1) AT4G38430 402 / 8e-135 ATROPGEF1, ROPGEF1 rho guanyl-nucleotide exchange factor 1 (.1) AT5G05940 401 / 1e-133 ATROPGEF5, ROPGEF5 ROP guanine nucleotide exchange factor 5 (.1) AT4G00460 378 / 2e-126 ATROPGEF3, ROPGEF3 RHO guanyl-nucleotide exchange factor 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G183800 [exp] 956 / 0 AT1G79860 637 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Potri.018G082400 [exp] 619 / 0 AT3G24620 597 / 0.0 RHO guanyl-nucleotide exchange factor 8 (.1) Potri.006G092600 [exp] 413 / 3e-138 AT5G02010 676 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.016G104400 [exp] 414 / 2e-137 AT5G02010 632 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Potri.009G140100 [exp] 408 / 1e-136 AT4G38430 715 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.004G179742 [exp] 403 / 8e-135 AT4G38430 729 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1) Potri.002G159700 [exp] 389 / 1e-130 AT4G00460 662 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.014G084200 [exp] 389 / 2e-130 AT4G00460 673 / 0.0 RHO guanyl-nucleotide exchange factor 3 (.1.2) Potri.002G014100 [exp] 388 / 3e-129 AT4G38430 592 / 0.0 rho guanyl-nucleotide exchange factor 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025797 [exp] 664 / 0 AT1G79860 608 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Lus10035865 [exp] 663 / 0 AT1G79860 606 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Lus10038560 [exp] 639 / 0 AT1G79860 565 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Lus10037866 [exp] 638 / 0 AT1G79860 591 / 0.0 MATERNAL EFFECT EMBRYO ARREST 64, RHO guanyl-nucleotide exchange factor 12 (.1) Lus10034927 [exp] 571 / 0 AT3G24620 564 / 0.0 RHO guanyl-nucleotide exchange factor 8 (.1) Lus10004676 [exp] 400 / 3e-133 AT5G05940 667 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10040248 [exp] 399 / 6e-133 AT5G05940 661 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10009874 [exp] 393 / 7e-131 AT5G05940 643 / 0.0 ROP guanine nucleotide exchange factor 5 (.1) Lus10021500 [exp] 394 / 8e-130 AT5G02010 664 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1) Lus10022601 [exp] 392 / 7e-129 AT5G02010 662 / 0.0 RHO guanyl-nucleotide exchange factor 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03759 [poplar] [flax] PRONE PRONE (Plant-specific Rop nucleotide exchanger)
Representative CDS sequence Show only first row Show all	>Potri.003G052600.2 pacid=42785570 polypeptide=Potri.003G052600.2.p locus=Potri.003G052600 ID=Potri.003G052600.2.v4.1 annot-version=v4.1 ATGGTTCGTGCTCTTGAACAAGAACAAGAAAATTATAGGTCTAGATTGTATCATTTCAAAGGGATGAATGAGAATGCAGGCGGTCGGCATGTTAAGAGCT TGAGCGCGGATGATAGTTCTAGTTTGGCAGAATACTCTTCAATGGATGATAGAATAACATCTAGAGGCCATCAGCCTCCAAGACCTGTTAATGAAAAGGG TCCTAGATCAAGGTCAGGCAAGGATGAAGCCGGTGCTGCAGGAAAAGATAATAAAAATCCAGAAATGGAACAGATGAAGGAAAGGTTCGCTAAATTGCTC CTTGGGGAGGATATGTCTGGTGGAGGAAAGGGTGTCTCTTCAGCTCTGGCATTGTCAAATGCAATTACAAACCTTGCTGCTTCTGTGTTTGGCGAACAAC GACGTCTAGAGCCCATGTCACCAGAAAGAAAAGCAAGGTGGATAAGAGAAATTGATTGGCTCTTATCTGTAACCGATCACGTTGTCGAACTTGTTCCTTC CCAGCAAAAATCCAAGGATGGATCAAATATGGAGATAATGGTGACACGACAACGAAATGATCTTCATATGAACATCCCAGCTTTGCGCAAGCTTGACGCA ATGCTTCTTGACTCCCTAGATAACTTCAAAGACCAAAATGAGTTCTATTATGTTTCAAGAGATTCCCCTGAGTCAGAAAAAGGAGGCACCAAGAGAAAAG ATGATAAATGGTGGCTACCTACTGTCAAAGTCCCTCCAGATGGTTTATCAGAAAGGGCTAAAAAATTTCTTCATTACCAAAAGGACTCTGTGAACCAAGT TCTCAAAGCAGCCATGGCTATAAATGCTCAAATTCTTTCAGAAATGGAGATTCCTGAAAACTACATTGAATCCCTTCCCAAGAATGGGAGGGCTAGCCTC GGAGACTCGGCGTATAGGAGTATTACACTTGAGTACTTCGATCCTGATCAATTTCTGTCCACTATGGACTTGTCATCAGAACATAAAATCCTAGACCTCA AGAACAGAATAGAGGCCTCCATAGTAATTTGGAGAAGGAAAATGAATCAGAAAGATGGTAAATCTGCTTGGGGATCTGCTGTCAGTTTGGAGAAGAGAGA ACTCTTTGAAGAGAGAGCAGAAACTATCTTACTCCTTCTAAAACAACGCTTCCCTGGACTTCCTCAATCTTCACTAGATGTTAGCAAAATTCAATATAAT GAGGATGTAGGGCACGCTATCTTGGAAAGCTATTCAAGAATTCTAGAAACCTTGGCCTCGACAGTCATGTCTCGAATTGAAGATGTGCTCTATGCTGATC ATGTTGCTCGAAATCCATCTCACGCAGGACACACGAGTAACACGTTAAAAGAGGCACCACAAGTACTGGTTTCTCCCAAAGAAGGGATGGAGAAGAACTC AGAAGATACAAACGCTTCAATGACACTGTCTGATTTTATGGGTTGGAGTCAGGAACAAAATGACACTACAGCAAAGAAGGATCCATTTGGATCAGATGAA CTACTCAAAGATGACGATAAGTGTACACAGAAACTTGCTAACATATCGACCAACCGGAAACCTTCCTATCTTGATAATCTAGGAGCTTCACGAAGCCCAA CAGCACGCCATTGA
AA sequence Show only first row Show all	>Potri.003G052600.2 pacid=42785570 polypeptide=Potri.003G052600.2.p locus=Potri.003G052600 ID=Potri.003G052600.2.v4.1 annot-version=v4.1 MVRALEQEQENYRSRLYHFKGMNENAGGRHVKSLSADDSSSLAEYSSMDDRITSRGHQPPRPVNEKGPRSRSGKDEAGAAGKDNKNPEMEQMKERFAKLL LGEDMSGGGKGVSSALALSNAITNLAASVFGEQRRLEPMSPERKARWIREIDWLLSVTDHVVELVPSQQKSKDGSNMEIMVTRQRNDLHMNIPALRKLDA MLLDSLDNFKDQNEFYYVSRDSPESEKGGTKRKDDKWWLPTVKVPPDGLSERAKKFLHYQKDSVNQVLKAAMAINAQILSEMEIPENYIESLPKNGRASL GDSAYRSITLEYFDPDQFLSTMDLSSEHKILDLKNRIEASIVIWRRKMNQKDGKSAWGSAVSLEKRELFEERAETILLLLKQRFPGLPQSSLDVSKIQYN EDVGHAILESYSRILETLASTVMSRIEDVLYADHVARNPSHAGHTSNTLKEAPQVLVSPKEGMEKNSEDTNASMTLSDFMGWSQEQNDTTAKKDPFGSDE LLKDDDKCTQKLANISTNRKPSYLDNLGASRSPTARH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.003G052600 [exp]	0	1
AT1G72490			unknown protein		Potri.001G166700 [exp]	1.41	0.8061
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Potri.009G052300 [exp]	6.16	0.6815
AT1G54650			Methyltransferase family prote...		Potri.013G044300 [exp]	6.70	0.7533
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Potri.013G154700 [exp]	6.92	0.7454	Pt-EXP2.8,PtrEXPA2
AT5G44680			DNA glycosylase superfamily pr...		Potri.008G081000 [exp]	7.41	0.7522
AT2G03630			unknown protein		Potri.008G096300 [exp]	9.59	0.7533
AT4G14750		IQD19	IQ-domain 19 (.1)		Potri.008G156700 [exp]	12.84	0.7121
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039200 [exp]	17.88	0.6966
AT2G01275			RING/FYVE/PHD zinc finger supe...		Potri.017G122300 [exp]	18.11	0.7290
AT3G12600		ATNUDT16	nudix hydrolase homolog 16 (.1...		Potri.016G036700 [exp]	19.36	0.6982

Compare expression of checked genes

Potri.003G052600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.