Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25737 501 / 3e-175 Sulfite exporter TauE/SafE family protein (.1) AT2G36630 322 / 2e-105 Sulfite exporter TauE/SafE family protein (.1) AT1G11540 120 / 3e-30 Sulfite exporter TauE/SafE family protein (.1) AT1G61740 108 / 3e-25 Sulfite exporter TauE/SafE family protein (.1) AT4G21250 95 / 7e-21 Sulfite exporter TauE/SafE family protein (.1) AT4G21260 76 / 1e-14 Sulfite exporter TauE/SafE family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G242100 [exp] 521 / 0 AT2G25737 568 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Potri.001G182700 [exp] 521 / 0 AT2G25737 428 / 6e-147 Sulfite exporter TauE/SafE family protein (.1) Potri.018G037400 [exp] 503 / 3e-176 AT2G25737 535 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Potri.001G183300 [exp] 488 / 4e-170 AT2G25737 381 / 2e-128 Sulfite exporter TauE/SafE family protein (.1) Potri.018G037500 [exp] 488 / 5e-170 AT2G25737 529 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Potri.005G124200 [exp] 486 / 1e-169 AT2G25737 453 / 1e-156 Sulfite exporter TauE/SafE family protein (.1) Potri.007G026800 [exp] 482 / 9e-168 AT2G25737 434 / 2e-149 Sulfite exporter TauE/SafE family protein (.1) Potri.001G183400 [exp] 481 / 2e-167 AT2G25737 418 / 5e-143 Sulfite exporter TauE/SafE family protein (.1) Potri.006G117900 [exp] 341 / 5e-113 AT2G36630 578 / 0.0 Sulfite exporter TauE/SafE family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011682 [exp] 514 / 1e-180 AT2G25737 632 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Lus10014316 [exp] 456 / 1e-157 AT2G25737 536 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Lus10026025 [exp] 454 / 1e-156 AT2G25737 533 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Lus10011683 [exp] 343 / 5e-114 AT2G25737 444 / 9e-154 Sulfite exporter TauE/SafE family protein (.1) Lus10020733 [exp] 327 / 3e-107 AT2G36630 611 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Lus10029813 [exp] 326 / 5e-107 AT2G36630 612 / 0.0 Sulfite exporter TauE/SafE family protein (.1) Lus10022134 [exp] 129 / 2e-34 AT2G25737 168 / 8e-50 Sulfite exporter TauE/SafE family protein (.1) Lus10020068 [exp] 102 / 2e-23 AT1G61740 371 / 2e-125 Sulfite exporter TauE/SafE family protein (.1) Lus10022133 [exp] 86 / 2e-20 AT2G25737 106 / 2e-28 Sulfite exporter TauE/SafE family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0292 [poplar] [flax] LysE PF01925 [poplar] [flax] TauE Sulfite exporter TauE/SafE
Representative CDS sequence Show only first row Show all	>Potri.003G053000.1 pacid=42787504 polypeptide=Potri.003G053000.1.p locus=Potri.003G053000 ID=Potri.003G053000.1.v4.1 annot-version=v4.1 ATGGATGTGATGGGATCAAAATGGCGGGGTTTGAGTTTGAGAATGATAGGAGGAGCAACTTTGATTGTTTCTCTTGGTATAGCTTCAATGGTTGCCATAG CTGAAGCAAGACTGAGAAAACAAGTTTCAAGTGTTCACGGGATCAGCCCGCAAGTTGAGCCTGGTCTTTTCATGAGAGTATTAAATTTCTTGTGGCAAAA AGGTTTATATGGATATACACATGTCTGGCCGGACATGAAATTTGGCTGGAAAATTGTAGTGGGAACCATAATTGGATTTTTTGGAGCAGCACTTGGGAGT GTAGGAGGTGTTGGTGGCGGTGGCATTTTTGTTCCCATGCTTACCTTGATTATTGGGTTTGATGCAAAATCATCGACTGCTATATCAAAATGTATGATTA CAGGTGCGGCAGCTTCTACAGTATACTACAATTTAAAGCTTAGGCATCCTACATTGGATATGCCCGTTATTGACTACGACTTGGCGCTCTTATTTCAACC AATGTTGGTGTTAGGAATCAGCATTGGGGTGGCTTTCAATGTGATTTTTGCTGACTGGATGATTACGGTTTTGCTAATCATTCTCTTCATTGGCACATCA ACTAAGGCTTTCTTAAAAGGTGTGGAAACATGGAAGAAAGAAACTATATTAAAACAGGAGGCTGCTAGGCGTTTGGAATCAAATGATGATGACAATGAAG AAGTGGAATACCAACCTCTTCCTGGAGGTCCAAGCGGTGGAGGAGGAGCAGAAAACAAGGAGCCTAAAAAAGAAGCGGTCTCTATTATTGAGAATGTGTA CTGGAAGGAACTTGGACTGCTCTTTGCTGTCTGGGGTGCAATCCTTGCATTGGAGATTGGCAAGAATTATACAACAACTTGTTCGATGGCATATTGGGCG CTGAATCTATTACAGATCCCTGTGGCTGTTGGTGTGTCTTCATACGAGGCAGTAAGCTTGTATAAAGGAACAAGGAAGATTGCATCCAAGGGAGAGACTG GCACAAATTGGCGAGCACACCAGCTGGTCCTATATTGTGCCTGTGGTGTATTGGCTGGTATAGTTGGCGGCTTACTTGGTCTAGGTGGAGGATTCATCTT AGGACCTCTTTTTCTGGAATTGGGAATCTCACCTCAGGTATCAAGTGCCACAGCGACCTTTGCTATGACATTTTCAGCGTCCATGTCCGTTGTAGAGTAT TACCTTCTGAAACGTTTTCCAGTCCCTTATGCTCTATACTTCGTTGCTGTGGCGACTGTTTCTGCCTTCGTAGGGCAGTTTGTGGTGCGAAAGCTGATCA ATTTATTAGGGAGAGCATCACTTATCATCTTCATCCTTGCCTTCACCATTTTTGTGAGCGCAATATCACTCGGTGGAGTCGGGATAGTAAACATGATTGA AAAGATTGAACACCATGACTACATGGGATTTGAAAACATTTGTTCATATGATGCGTAG
AA sequence Show only first row Show all	>Potri.003G053000.1 pacid=42787504 polypeptide=Potri.003G053000.1.p locus=Potri.003G053000 ID=Potri.003G053000.1.v4.1 annot-version=v4.1 MDVMGSKWRGLSLRMIGGATLIVSLGIASMVAIAEARLRKQVSSVHGISPQVEPGLFMRVLNFLWQKGLYGYTHVWPDMKFGWKIVVGTIIGFFGAALGS VGGVGGGGIFVPMLTLIIGFDAKSSTAISKCMITGAAASTVYYNLKLRHPTLDMPVIDYDLALLFQPMLVLGISIGVAFNVIFADWMITVLLIILFIGTS TKAFLKGVETWKKETILKQEAARRLESNDDDNEEVEYQPLPGGPSGGGGAENKEPKKEAVSIIENVYWKELGLLFAVWGAILALEIGKNYTTTCSMAYWA LNLLQIPVAVGVSSYEAVSLYKGTRKIASKGETGTNWRAHQLVLYCACGVLAGIVGGLLGLGGGFILGPLFLELGISPQVSSATATFAMTFSASMSVVEY YLLKRFPVPYALYFVAVATVSAFVGQFVVRKLINLLGRASLIIFILAFTIFVSAISLGGVGIVNMIEKIEHHDYMGFENICSYDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.003G053000 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G034100 [exp]	5.09	0.9527
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Potri.018G051400 [exp]	5.47	0.9357
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008300 [exp]	8.48	0.9443
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.006G166800 [exp]	9.64	0.9418
AT5G47380			Protein of unknown function, D...		Potri.001G157200 [exp]	9.94	0.8529
AT5G04370		NAMT1	S-adenosyl-L-methionine-depend...		Potri.019G022200 [exp]	14.07	0.9285
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073466 [exp]	15.00	0.9118
					Potri.007G016532 [exp]	17.74	0.9361
AT1G60420			DC1 domain-containing protein ...		Potri.008G175600 [exp]	18.60	0.8261
AT1G11200			Protein of unknown function (D...		Potri.011G044200 [exp]	19.10	0.8675

Compare expression of checked genes

Potri.003G053000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.