Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15240 986 / 0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) AT2G15900 241 / 8e-66 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G183100 [exp] 1862 / 0 AT1G15240 512 / 1e-167 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Potri.009G108300 [exp] 266 / 7e-74 AT2G15900 1117 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Potri.004G146600 [exp] 266 / 8e-74 AT2G15900 1073 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035877 [exp] 1208 / 0 AT1G15240 1026 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Lus10025785 [exp] 1131 / 0 AT1G15240 953 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1.2.3) Lus10027939 [exp] 269 / 8e-75 AT2G15900 1001 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10012043 [exp] 204 / 3e-58 AT2G15900 404 / 1e-133 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10012042 [exp] 190 / 5e-52 AT2G15900 495 / 9e-167 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10023847 [exp] 194 / 2e-50 AT2G15900 606 / 0.0 Phox-associated domain;Phox-like;Sorting nexin, C-terminal (.1) Lus10025786 [exp] 52 / 3e-07 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02194 [poplar] [flax] PXA PXA domain
Representative CDS sequence Show only first row Show all	>Potri.003G053200.1 pacid=42785124 polypeptide=Potri.003G053200.1.p locus=Potri.003G053200 ID=Potri.003G053200.1.v4.1 annot-version=v4.1 ATGAATGCGAGAATGAGCACGCAAAGGCAGGTGATTGTACGGGACTTAGTGGAGGAAGCCAAGAAGAGGATTGTTATGTTGGTTATTTGTGTTGTTGGAT TATCTTATCTCATGTCCTTAACGAGTGCCTCAGTTTGGGTCAACTTGCCTGCTGCTGCTTCCTTGATCATTCTCCTTCGCTACTTTTCCCTGGATTATGA AATGCGCAAGAAAGCTGCTGTATATAACAACAAACCAGCCTCCACAACATCAAGCACACTGTCACAAAACAAATCTCTTGAATTTACCAGGGTTGTTGAA AAGTCCGATTGGAGAAGGAAAGTGAATTCACCTGTTGTTGAGGATGCAATAGATCATTTCACTAGACGTCTAGTCTCTGAGTGGGTGACAGATCTATGGT ACTCTCGCTTAACCCCTGATAAAGAAGGTCCGGAAGAACTGGTGCAGATAATGAATGGTGTTCTTGGGGAATTTTCAAGTCGCATGAGAAATGTAAATCT TATTGATCTACTGACAAGGGATTTTATTAATCTCATCTGCACCCACTTGGAGCTTTTTCGTGCCATTCAAGCAAAGATGGAAAAGCGACAGTCTAGTGTG CTTACCATTGAACAGCGAGACAAGGAACTAAGACATGTCCTGGCTGCTGAGAACAAATTGCACCCTGCTTTATTTTCTACTGAAGCTGAGCACAAGGTTT TGCAGCATCTGATGGATGGTCTCATTTCTTTTACATTCAAGCCAGCAGATCTGCAGTGCTCTTTCTTCCGTTATGTTGTTAGGGAACTTCTTGCTTGTGC GGTAATGCGACCAGTGTTAAACTTAGCTAGCCCAAGGTTCATAAACGAAAGGATTGAAAGTGTTGTCATTTCTAAGGCTAATCAAAGAGTTGCTGCAGCA CAAGAGACATCTCATTTCAAACCAAATGGGTCTTCAAGGATCTCATCCAATCATTTTTCGAGGTTTTTAGATCCTACTGATACTGGGGTTGAGCTTGTGC AGTTAAAAACCGACCAATGCAGAGGTGGACCAGATGCCCCTGAAAAAGATAAAGTGAATGGAAGCCATATCTCAAAAGATCCATTACTTTACATTGATAC CCAATCTTCCCGCACATGGAGCTCGCTGCCCATGAATTCCCAGATTATTAATGAAGAAGGAATGCAACGACATTTTTCAGGAGGAGAATGGGGTGAGAGG TTGGATATGATGTCTCGCAGAAAGACTGCAGTCCTTGCTCCAGAAAATTTTGAAAACATGTGGACAAAAGGGAGAAACTATAGAAAGAAAGAAGGGGAAA ATCGATTGATAGAGCAAGTCCCTCAGAATTCTTCAGCGAGTAAGTATGTTACATCAGATCATTCAAAGAGGGCATCTAATTCCAAGAAGGATGGTGTAAC CAAACTCGATGCCCCTCTGGCCCACAACGCCCAGTCTGTGGGTACTGAGCAATCTACAGTAGAAAACCCTCTACATCATACAGATCAGAATATGTCAAAC TATCCACTATTTAGTTCACACAAAGATGGCATACGGAGCCTCATGCGTGTAGATGAGATTGAATCAGGTAGCACTAGCTCTTATACTTCTGAAGAGGAAG ATGCGAACAGTGTAACCGGACTTGATTCTCCAGGAACTAAAGTCTGGGATGGTAAAACTAACAGAAACCTGGCTGTTTCCCACATTCATCATCCACTTGA AAATCCTGATGGCCACAGGGAGAAGAAGACTGGCAGAGGGCTTGCTCACTATCAAAGATTATCTAGACACCAGTCTGGCAGTAAAAGGTCAAGGCCAAGC ACTCAGAAGGTACATGTTTGGCAAGAGATTGAGAGAAAAAGCTTCTTGTCTGGAGATGGACAGGATGTACTTAGTTTAAAAGGACATACTAAAGCTGATG ATTTCAGTGACGATTCTGAGGTTGAAAGTTTAGATAGAGTTTACAGTGGAGCAACTGCGTGTTCATCTGCAACATCTGTTTCTATTCCTGAAAACCACAC TTCAAATGTTAATTCTTTTAAACATTCATTAATGGTGGACTCAATTTATAAGTTGAGATGCGAGGTTTTGGGTGCAAATATTGTTAAGAGTGGCTCTAAA ACATTTGCTGTTTATTCCATATCTGTTACAGATGTAAATAATAATAGTTGGTCGATCAAAAGAAGGTTTCGACATTTCGAGGAGTTACATAGACGTCTCA AAGAGTATCCGGAATATAGTCTTCATTTGCCACCTAAGCATTTTCTCTCTACAGGCTTAGACGTGCCTGTCATACAAGAGCGGTGTAAATTGCTTGATAT ATATCTAAAGAAGCTCTTGCTACTTCCAACAATTTCAGGATCCATTGAAGTCTGGGACTTTCTTAGTGTTGATTCTCAGACGTATGTGTTCTCTAATTCG TTTTCTATCATCGAAACATTATCAGTTGACCTGGATGACAAGCCCTCTGAAAAGAGTAAAAGGGTTTCAAATTTTATTGGCCCTGCAATCAATTACTTAT CCGCTAGGAAGGAGCAATTGAGTGCAGAGTGCAAGGAATCTATATTGCAGACAAAGCATAATCTTGGGGCAGTTGGGGCACGAATGATTTCAAAAGACAC GCCTCGTTCTCCGGTGAAGTCTATTAAAGAATCTGGAAGATCATTGAAGGATCCAGGAAGTGATTCAGATATGCAAAAGAATGTATCATCTGCTAGAAAT TTAGAGGAGAATGTAAGAGTGGGTGATAGCTTAGAAGAGATGTCTGCGTCTATTCACGATACTGCTAGTGATCACATGCTCCCTACAGAGTGGGTGCCAG CAAATTTGACTGTTCCTATACTTGACCTGGTAGATGTCATTTTCCAGCTACAAGATGGTGGATGGATCAGGAGGCAGGCTTTTTGGGTGGCCAAACAGAT ACTACAACTAGGAATGGGCGATGCTTTAGATGATTGGTTGATAGAGAAAATCCAGCTTCTGCGTAGGGGTTCAGTTGTTGCATCAGGGATCAAGCGGGTT GAGCAGATACTTTGGCCTGATGGAATATTCATCACCAAACATCCAAAGAGACGGCCACCACCCCAGCAACCCACGGAAGTGTCTTCTCCTAAATTGATTT CCCCTCATGGCCAGCAACCCATGGAAGTCTCTTCACCTAGATTGAATGATGAGCAGCAACAACAGGATGCAGTTCGACGAGCTAAATTTGTATATGAGCT GATGATTGACAACGCACCAGCTGCTGTTGTGGGCCTTGTTGGTCGAAAGGAGTATGAACAACGTGCAAAAGATCTCTACTTCTTTCTTCAGTCATCAGTT TGTACGAAGCAACTGGCTTTTGATCTCCTTGAGCTGCTGCTTTTGACTGCATTTCCAGAACTGGATTCTGTTTTCAGGCAGTTGCGTGTAGAGAAGCATA AATTTGGCGAGTTTAAACCCAATTAG
AA sequence Show only first row Show all	>Potri.003G053200.1 pacid=42785124 polypeptide=Potri.003G053200.1.p locus=Potri.003G053200 ID=Potri.003G053200.1.v4.1 annot-version=v4.1 MNARMSTQRQVIVRDLVEEAKKRIVMLVICVVGLSYLMSLTSASVWVNLPAAASLIILLRYFSLDYEMRKKAAVYNNKPASTTSSTLSQNKSLEFTRVVE KSDWRRKVNSPVVEDAIDHFTRRLVSEWVTDLWYSRLTPDKEGPEELVQIMNGVLGEFSSRMRNVNLIDLLTRDFINLICTHLELFRAIQAKMEKRQSSV LTIEQRDKELRHVLAAENKLHPALFSTEAEHKVLQHLMDGLISFTFKPADLQCSFFRYVVRELLACAVMRPVLNLASPRFINERIESVVISKANQRVAAA QETSHFKPNGSSRISSNHFSRFLDPTDTGVELVQLKTDQCRGGPDAPEKDKVNGSHISKDPLLYIDTQSSRTWSSLPMNSQIINEEGMQRHFSGGEWGER LDMMSRRKTAVLAPENFENMWTKGRNYRKKEGENRLIEQVPQNSSASKYVTSDHSKRASNSKKDGVTKLDAPLAHNAQSVGTEQSTVENPLHHTDQNMSN YPLFSSHKDGIRSLMRVDEIESGSTSSYTSEEEDANSVTGLDSPGTKVWDGKTNRNLAVSHIHHPLENPDGHREKKTGRGLAHYQRLSRHQSGSKRSRPS TQKVHVWQEIERKSFLSGDGQDVLSLKGHTKADDFSDDSEVESLDRVYSGATACSSATSVSIPENHTSNVNSFKHSLMVDSIYKLRCEVLGANIVKSGSK TFAVYSISVTDVNNNSWSIKRRFRHFEELHRRLKEYPEYSLHLPPKHFLSTGLDVPVIQERCKLLDIYLKKLLLLPTISGSIEVWDFLSVDSQTYVFSNS FSIIETLSVDLDDKPSEKSKRVSNFIGPAINYLSARKEQLSAECKESILQTKHNLGAVGARMISKDTPRSPVKSIKESGRSLKDPGSDSDMQKNVSSARN LEENVRVGDSLEEMSASIHDTASDHMLPTEWVPANLTVPILDLVDVIFQLQDGGWIRRQAFWVAKQILQLGMGDALDDWLIEKIQLLRRGSVVASGIKRV EQILWPDGIFITKHPKRRPPPQQPTEVSSPKLISPHGQQPMEVSSPRLNDEQQQQDAVRRAKFVYELMIDNAPAAVVGLVGRKEYEQRAKDLYFFLQSSV CTKQLAFDLLELLLLTAFPELDSVFRQLRVEKHKFGEFKPN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15240			Phox-associated domain;Phox-li...		Potri.003G053200 [exp]	0	1
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Potri.002G113800 [exp]	8.66	0.8398	RXW8.1
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Potri.011G069600 [exp]	9.16	0.8653
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Potri.008G192700 [exp]	18.70	0.8487
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Potri.001G132900 [exp]	23.36	0.8415
AT4G38200			SEC7-like guanine nucleotide e...		Potri.009G169800 [exp]	24.16	0.8103
					Potri.019G120050 [exp]	27.16	0.8018
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Potri.007G124300 [exp]	28.82	0.8605
AT5G28350			Quinoprotein amine dehydrogena...		Potri.002G162000 [exp]	29.39	0.7452
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Potri.003G104300 [exp]	30.33	0.7906
AT3G06600			unknown protein		Potri.010G147301 [exp]	30.59	0.8476

Compare expression of checked genes

Potri.003G053200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.